AMBER Archive (2007) - Jul 2007 By DateMost recent messages
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Starting: Sun Jul 01 2007 - 08:10:09 CDT
Ending: Tue Jul 31 2007 - 16:34:12 CDT
- Re: AMBER: Problem with leaprc yen li (Sun Jul 01 2007 - 08:10:09 CDT)
- Re: AMBER: amber7 and xleap Saiful Islam (Sun Jul 01 2007 - 08:43:45 CDT)
- Re: Fwd: RE: Re: AMBER: $AMBERHOME on PATH Francesco Pietra (Sun Jul 01 2007 - 09:38:03 CDT)
- Re: Fwd: RE: Re: AMBER: $AMBERHOME on PATH M. L. Dodson (Sun Jul 01 2007 - 10:57:05 CDT)
- RE: AMBER: xleap and amber7 Ross Walker (Sun Jul 01 2007 - 12:33:15 CDT)
- RE: AMBER: amber7 and xleap Ross Walker (Sun Jul 01 2007 - 12:32:45 CDT)
- Re: AMBER: Problem with leaprc yen li (Sun Jul 01 2007 - 12:36:14 CDT)
- AMBER: large RMS fluctuations in turning off VDW interactions by TI Holly Freedman (Sun Jul 01 2007 - 14:13:17 CDT)
- Re: AMBER: large RMS fluctuations in turning off VDW interactions by TI Holly Freedman (Sun Jul 01 2007 - 14:54:11 CDT)
- Fwd: Re: Fwd: RE: Re: AMBER: $AMBERHOME on PATH Francesco Pietra (Sun Jul 01 2007 - 15:50:39 CDT)
- Re: AMBER: large RMS fluctuations in turning off VDW interactions by TI Julien Michel (Sun Jul 01 2007 - 17:42:53 CDT)
- AMBER: bug in nonbond_list.f (nee ew_setup.f) Dan Kidger (Mon Jul 02 2007 - 04:42:58 CDT)
- Re: AMBER: xleap and amber7 Saiful Islam (Mon Jul 02 2007 - 09:05:34 CDT)
- Re: AMBER: Problem with leaprc David A. Case (Mon Jul 02 2007 - 09:44:59 CDT)
- Re: AMBER: xleap and amber7 Adrian Roitberg (Mon Jul 02 2007 - 09:20:28 CDT)
- Re: AMBER: large RMS fluctuations in turning off VDW interactions by TI David Mobley (Mon Jul 02 2007 - 15:03:17 CDT)
- Re: AMBER: large RMS fluctuations in turning off VDW interactions by TI David A. Case (Mon Jul 02 2007 - 15:20:27 CDT)
- AMBER: Saving (.)prepin file Johnson Agbo (Mon Jul 02 2007 - 15:35:00 CDT)
- Re: AMBER: large RMS fluctuations in turning off VDW interactions by TI Holly Freedman (Mon Jul 02 2007 - 15:51:12 CDT)
- Re: AMBER: Saving (.)prepin file David A. Case (Mon Jul 02 2007 - 15:56:57 CDT)
- Re: AMBER: Saving (.)prepin file Bill Ross (Mon Jul 02 2007 - 16:05:53 CDT)
- AMBER: convergence criterion not reached Jena M (Mon Jul 02 2007 - 18:53:22 CDT)
- AMBER: Slow Processor Loads when Using PMEMD Jonathan Suever (Mon Jul 02 2007 - 19:28:48 CDT)
- Re: AMBER: convergence criterion not reached David A. Case (Mon Jul 02 2007 - 20:14:53 CDT)
- Re: AMBER: Slow Processor Loads when Using PMEMD David A. Case (Mon Jul 02 2007 - 20:24:09 CDT)
- RE: AMBER: Slow Processor Loads when Using PMEMD Ross Walker (Mon Jul 02 2007 - 20:42:01 CDT)
- AMBER: How to use antechamber properly? ÇÑÀç¹ü (Tue Jul 03 2007 - 00:57:33 CDT)
- Re: AMBER: large RMS fluctuations in turning off VDW interactions by TI David A. Case (Tue Jul 03 2007 - 01:34:13 CDT)
- AMBER: O-acetylated sugar Toshifumi Yui (Tue Jul 03 2007 - 07:26:12 CDT)
- AMBER: About amber7 Saiful Islam (Tue Jul 03 2007 - 08:49:28 CDT)
- Re: AMBER: About amber7 Carlos Simmerling (Tue Jul 03 2007 - 08:57:14 CDT)
- AMBER: ptraj: RMS per residues and per time Sascha Rehm (Tue Jul 03 2007 - 09:03:04 CDT)
- AMBER: Nucleic acid : nonplanarity Sophie Barbe (Tue Jul 03 2007 - 10:48:07 CDT)
- Re: AMBER: large RMS fluctuations in turning off VDW interactions by TI Holly Freedman (Tue Jul 03 2007 - 12:14:29 CDT)
- AMBER: antechamber save prmtop inpcrd Francesco Pietra (Tue Jul 03 2007 - 12:55:11 CDT)
- AMBER: Who has the structure file of beta-chitin? WANG,YING (Tue Jul 03 2007 - 13:19:11 CDT)
- Re: AMBER: large RMS fluctuations in turning off VDW interactions by TI David Mobley (Tue Jul 03 2007 - 14:55:54 CDT)
- AMBER: Fwd: antechamber save prmtop inpcrd Francesco Pietra (Wed Jul 04 2007 - 01:14:23 CDT)
- AMBER: Simulated annealing - Nudget Elastic Band Francesco Pietra (Wed Jul 04 2007 - 02:01:58 CDT)
- AMBER: Slight_error_on_Compiling_Replica_Exchange j j (Wed Jul 04 2007 - 03:57:28 CDT)
- Re: AMBER: Slight_error_on_Compiling_Replica_Exchange Ye Mei (Wed Jul 04 2007 - 04:30:09 CDT)
- Re: AMBER: Slight_error_on_Compiling_Replica_Exchange j j (Wed Jul 04 2007 - 05:13:22 CDT)
- Re: AMBER: Simulated annealing - Nudget Elastic Band Carlos Simmerling (Wed Jul 04 2007 - 05:39:10 CDT)
- Re: AMBER: Problem with leaprc yen li (Wed Jul 04 2007 - 07:23:49 CDT)
- AMBER: Generation of ESP(ind) within atomic charges derivation for polarizable force field Anela Ivanova (Wed Jul 04 2007 - 07:26:02 CDT)
- AMBER: Nucleic acid : nonplanarity Sophie Barbe (Wed Jul 04 2007 - 07:37:26 CDT)
- Re: AMBER: large RMS fluctuations in turning off VDW interactions by TI steinbrt_at_scripps.edu (Wed Jul 04 2007 - 07:51:08 CDT)
- Re: AMBER: Simulated annealing - Nudget Elastic Band Francesco Pietra (Wed Jul 04 2007 - 08:13:41 CDT)
- Re: AMBER: Nucleic acid : nonplanarity Mathy Froeyen (Wed Jul 04 2007 - 08:57:08 CDT)
- Re: AMBER: Fwd: antechamber save prmtop inpcrd David A. Case (Wed Jul 04 2007 - 10:53:04 CDT)
- Re: AMBER: Problem with leaprc David A. Case (Wed Jul 04 2007 - 11:15:39 CDT)
- Re: AMBER: Fwd: antechamber save prmtop inpcrd Francesco Pietra (Wed Jul 04 2007 - 11:54:08 CDT)
- Re: AMBER: Problem with leaprc yen li (Wed Jul 04 2007 - 13:21:22 CDT)
- Re: AMBER: large RMS fluctuations in turning off VDW interactions by TI Holly Freedman (Wed Jul 04 2007 - 14:53:01 CDT)
- Re: AMBER: Fwd: antechamber save prmtop inpcrd David A. Case (Wed Jul 04 2007 - 15:15:21 CDT)
- Re: AMBER: Problem with leaprc David A. Case (Wed Jul 04 2007 - 15:31:29 CDT)
- Re: AMBER: Fwd: antechamber save prmtop inpcrd Francesco Pietra (Wed Jul 04 2007 - 16:08:02 CDT)
- AMBER: antechamber: mopac charges Neelanjana Sengupta (Wed Jul 04 2007 - 18:21:02 CDT)
- Re: AMBER: antechamber: mopac charges David A. Case (Wed Jul 04 2007 - 18:27:02 CDT)
- Re: AMBER: xleap and amber7 Saiful Islam (Wed Jul 04 2007 - 22:53:42 CDT)
- Re: AMBER: xleap and amber7 Ilyas Yildirim (Wed Jul 04 2007 - 23:53:37 CDT)
- AMBER: testing amber9 for parallel use Sally Pias (Thu Jul 05 2007 - 01:47:22 CDT)
- AMBER: Convergence criteria in replica exchange simulations Seongeun Yang (Thu Jul 05 2007 - 06:18:17 CDT)
- Re: AMBER: testing amber9 for parallel use Carlos Simmerling (Thu Jul 05 2007 - 07:22:20 CDT)
- Re: AMBER: xleap and amber7 Carlos Simmerling (Thu Jul 05 2007 - 07:23:44 CDT)
- Re: AMBER: Convergence criteria in replica exchange simulations Carlos Simmerling (Thu Jul 05 2007 - 07:26:26 CDT)
- AMBER: How to extract energy of molecule from the system with explicit water molecules priya priya (Thu Jul 05 2007 - 09:31:03 CDT)
- Re: AMBER: How to extract energy of molecule from the system with explicit water molecules Carlos Simmerling (Thu Jul 05 2007 - 09:36:05 CDT)
- Re: AMBER: How to extract energy of molecule from the system with explicit water molecules priya priya (Thu Jul 05 2007 - 10:10:23 CDT)
- Re: AMBER: How to extract energy of molecule from the system with explicit water molecules Carlos Simmerling (Thu Jul 05 2007 - 10:25:42 CDT)
- Re: AMBER: How to extract energy of molecule from the system with explicit water molecules priya priya (Thu Jul 05 2007 - 10:57:59 CDT)
- Re: AMBER: large RMS fluctuations in turning off VDW interactions by TI David Mobley (Thu Jul 05 2007 - 10:56:43 CDT)
- Re: AMBER: How to extract energy of molecule from the system with explicit water molecules Carlos Simmerling (Thu Jul 05 2007 - 11:04:12 CDT)
- Re: AMBER: How to extract energy of molecule from the system with explicit water molecules priya priya (Thu Jul 05 2007 - 11:40:41 CDT)
- Re: AMBER: How to extract energy of molecule from the system with explicit water molecules Carlos Simmerling (Thu Jul 05 2007 - 11:45:14 CDT)
- Re: AMBER: Sander Error Colby C (Tue Jul 03 2007 - 13:21:18 CDT)
- AMBER: Nudget Elastic Band query Francesco Pietra (Thu Jul 05 2007 - 12:43:43 CDT)
- Re: AMBER: Nudget Elastic Band query Carlos Simmerling (Thu Jul 05 2007 - 12:53:53 CDT)
- Re: AMBER: Nudget Elastic Band query Francesco Pietra (Thu Jul 05 2007 - 14:02:19 CDT)
- Re: AMBER: Nudget Elastic Band query Carlos Simmerling (Thu Jul 05 2007 - 14:08:31 CDT)
- Re: AMBER: antechamber: mopac charges Neelanjana Sengupta (Thu Jul 05 2007 - 14:26:30 CDT)
- Re: AMBER: antechamber: mopac charges David A. Case (Thu Jul 05 2007 - 15:24:09 CDT)
- Re: AMBER: Nudget Elastic Band query Francesco Pietra (Thu Jul 05 2007 - 15:28:31 CDT)
- AMBER: QM/MM LJ parameters Evan Kelly (Thu Jul 05 2007 - 18:31:35 CDT)
- RE: AMBER: QM/MM LJ parameters Ross Walker (Thu Jul 05 2007 - 19:58:49 CDT)
- Re: AMBER: How to extract energy of molecule from the system with explicit water molecules priya priya (Fri Jul 06 2007 - 01:58:28 CDT)
- Re: AMBER: ptraj: RMS per residues and per time Jianyin Shao (Fri Jul 06 2007 - 02:54:06 CDT)
- Re: AMBER: How to extract energy of molecule from the system with explicit water molecules priya priya (Fri Jul 06 2007 - 05:39:58 CDT)
- Re: AMBER: How to extract energy of molecule from the system with explicit water molecules priya priya (Fri Jul 06 2007 - 07:25:02 CDT)
- AMBER: Stirp command in ptraj priya priya (Fri Jul 06 2007 - 07:33:11 CDT)
- Re: AMBER: Stirp command in ptraj Carlos Simmerling (Fri Jul 06 2007 - 07:35:33 CDT)
- Re: AMBER: Stirp command in ptraj Steven Winfield (Fri Jul 06 2007 - 07:36:06 CDT)
- Re: AMBER: Stirp command in ptraj priya priya (Fri Jul 06 2007 - 07:41:22 CDT)
- Re: AMBER: Stirp command in ptraj Carlos Simmerling (Fri Jul 06 2007 - 08:14:20 CDT)
- Re: AMBER: Stirp command in ptraj priya priya (Fri Jul 06 2007 - 08:27:27 CDT)
- Re: AMBER: Stirp command in ptraj Steven Winfield (Fri Jul 06 2007 - 08:32:07 CDT)
- Re: AMBER: Stirp command in ptraj priya priya (Fri Jul 06 2007 - 08:43:13 CDT)
- Re: AMBER: Stirp command in ptraj priya priya (Fri Jul 06 2007 - 11:41:05 CDT)
- Re: AMBER: Stirp command in ptraj Carlos Simmerling (Fri Jul 06 2007 - 11:45:43 CDT)
- AMBER: Substitute for GAFF Evan Kelly (Fri Jul 06 2007 - 12:32:50 CDT)
- Re: AMBER: large RMS fluctuations in turning off VDW interactions by TI Thomas Steinbrecher (Fri Jul 06 2007 - 12:55:32 CDT)
- Re: AMBER: xleap and amber7 Saiful Islam (Fri Jul 06 2007 - 21:23:35 CDT)
- AMBER: Simulated Annealing - Best way to create randomness Francesco Pietra (Sat Jul 07 2007 - 09:56:41 CDT)
- AMBER: RESP charge generation Neelanjana Sengupta (Sat Jul 07 2007 - 18:08:07 CDT)
- AMBER: Problem with running Sander Lili Peng (Sat Jul 07 2007 - 18:10:06 CDT)
- Re: AMBER: Problem with running Sander David A. Case (Sat Jul 07 2007 - 23:59:05 CDT)
- Re: AMBER: RESP charge generation FyD (Sun Jul 08 2007 - 05:19:16 CDT)
- Re: AMBER: Problem with running Sander Carlos Simmerling (Sun Jul 08 2007 - 06:28:58 CDT)
- AMBER: corrected reaction field energy and PBCAL AYTUG TUNCEL (Sun Jul 08 2007 - 19:40:53 CDT)
- AMBER: program bug? M. Maeda (Sun Jul 08 2007 - 21:24:58 CDT)
- AMBER: adding water molecules in lipid bilayer model Vijay Manickam Achari (Sun Jul 08 2007 - 22:22:46 CDT)
- Re: AMBER: xleap and amber7 Benjamin Juhl (Mon Jul 09 2007 - 02:08:57 CDT)
- AMBER: antechamber Marie Brut (Mon Jul 09 2007 - 06:56:19 CDT)
- Re: AMBER: adding water molecules in lipid bilayer model M. L. Dodson (Mon Jul 09 2007 - 07:59:01 CDT)
- AMBER: Specific/Non-specific dihedral issue in Amber Narayanan Veeraraghavan (Mon Jul 09 2007 - 09:30:44 CDT)
- Re: AMBER: antechamber David A. Case (Mon Jul 09 2007 - 09:41:23 CDT)
- Re: AMBER: program bug? David A. Case (Mon Jul 09 2007 - 09:48:35 CDT)
- Re: AMBER: Specific/Non-specific dihedral issue in Amber David A. Case (Mon Jul 09 2007 - 09:58:51 CDT)
- Re: AMBER: antechamber Barbault Florent (Mon Jul 09 2007 - 09:59:03 CDT)
- Re: AMBER: Simulated Annealing - Best way to create randomness Seth Lilavivat (Mon Jul 09 2007 - 10:03:29 CDT)
- Re: AMBER: Sander Error Colby C (Mon Jul 09 2007 - 10:39:50 CDT)
- AMBER: Could not find cntrl namelist Francesco Pietra (Mon Jul 09 2007 - 11:56:58 CDT)
- Re: AMBER: Could not find cntrl namelist M. L. Dodson (Mon Jul 09 2007 - 12:10:58 CDT)
- RE: AMBER: Could not find cntrl namelist Ross Walker (Mon Jul 09 2007 - 12:26:29 CDT)
- AMBER: TIP4P MD simulations Hashem Taha (Mon Jul 09 2007 - 12:53:28 CDT)
- Re: AMBER: Specific/Non-specific dihedral issue in Amber Narayanan Veeraraghavan (Mon Jul 09 2007 - 13:02:38 CDT)
- Re: AMBER: TIP4P MD simulations Melinda Layten (Mon Jul 09 2007 - 13:05:39 CDT)
- Re: AMBER: TIP4P MD simulations David A. Case (Mon Jul 09 2007 - 13:31:15 CDT)
- Re: AMBER: Specific/Non-specific dihedral issue in Amber Bill Ross (Mon Jul 09 2007 - 13:48:28 CDT)
- Re: AMBER: TIP4P MD simulations Robert Duke (Mon Jul 09 2007 - 14:35:04 CDT)
- Re: AMBER: Could not find cntrl namelist Francesco Pietra (Mon Jul 09 2007 - 15:53:43 CDT)
- AMBER: manganese ion Davide Moiani (Mon Jul 09 2007 - 16:02:31 CDT)
- Re: AMBER: Could not find cntrl namelist M. L. Dodson (Mon Jul 09 2007 - 16:09:06 CDT)
- Re: AMBER: Could not find cntrl namelist Thomas Cheatham III (Mon Jul 09 2007 - 16:17:23 CDT)
- Re: AMBER: Could not find cntrl namelist Francesco Pietra (Mon Jul 09 2007 - 16:22:30 CDT)
- Re: AMBER: Could not find cntrl namelist Francesco Pietra (Mon Jul 09 2007 - 16:31:18 CDT)
- RE: AMBER: Could not find cntrl namelist Ross Walker (Mon Jul 09 2007 - 16:38:01 CDT)
- Re: AMBER: antechamber Francesco Pietra (Mon Jul 09 2007 - 16:57:45 CDT)
- AMBER: surface area over the trajectory mkseo (Mon Jul 09 2007 - 16:52:32 CDT)
- Re: AMBER: surface area over the trajectory Carlos Simmerling (Mon Jul 09 2007 - 17:30:54 CDT)
- Re: AMBER: surface area over the trajectory mkseo (Mon Jul 09 2007 - 17:55:18 CDT)
- Re: AMBER: adding water molecules in lipid bilayer model Fenghui Fan (Mon Jul 09 2007 - 18:11:45 CDT)
- AMBER: Question on TIP4P model Du, Shiyu (Mon Jul 09 2007 - 19:01:58 CDT)
- Re: AMBER: antechamber M. L. Dodson (Mon Jul 09 2007 - 19:08:27 CDT)
- AMBER: tgtrmsmask and tgtfitmask Holly Freedman (Mon Jul 09 2007 - 21:03:39 CDT)
- AMBER: À´×Ôpig5678µÄÓʼþ pig5678 (Tue Jul 10 2007 - 01:59:22 CDT)
- Re: AMBER: antechamber Francesco Pietra (Tue Jul 10 2007 - 02:04:39 CDT)
- Re: AMBER: manganese ion Guillermo Mulliert Carlín (Tue Jul 10 2007 - 03:39:40 CDT)
- Re: AMBER: surface area over the trajectory Carlos Simmerling (Tue Jul 10 2007 - 05:33:44 CDT)
- Re: AMBER: tgtrmsmask and tgtfitmask Carlos Simmerling (Tue Jul 10 2007 - 06:26:08 CDT)
- Re: AMBER: xleap and amber7 Saiful Islam (Tue Jul 10 2007 - 07:47:00 CDT)
- Re: AMBER: ????pig5678?????? David A. Case (Tue Jul 10 2007 - 10:14:45 CDT)
- Re: AMBER: tgtrmsmask and tgtfitmask David A. Case (Tue Jul 10 2007 - 11:01:27 CDT)
- Re: AMBER: surface area over the trajectory Mikyung (Tue Jul 10 2007 - 11:20:12 CDT)
- Re: AMBER: manganese ion Davide Moiani (Tue Jul 10 2007 - 11:47:38 CDT)
- AMBER: Saving (.)prepin file Johnson Agbo (Mon Jul 09 2007 - 13:22:40 CDT)
- RE: AMBER: Could not find cntrl namelist Francesco Pietra (Tue Jul 10 2007 - 01:26:54 CDT)
- Re: AMBER: Saving (.)prepin file David A. Case (Tue Jul 10 2007 - 12:45:58 CDT)
- Re: AMBER: Could not find cntrl namelist David A. Case (Tue Jul 10 2007 - 12:52:10 CDT)
- AMBER: Input required for RESP Neelanjana Sengupta (Tue Jul 10 2007 - 13:03:54 CDT)
- RE: AMBER: Could not find cntrl namelist Ross Walker (Tue Jul 10 2007 - 13:21:12 CDT)
- Re: AMBER: surface area over the trajectory Carlos Simmerling (Tue Jul 10 2007 - 14:09:51 CDT)
- RE: AMBER: Could not find cntrl namelist Francesco Pietra (Tue Jul 10 2007 - 16:11:48 CDT)
- AMBER: extract protein energy from MD trajectory Mikyung (Tue Jul 10 2007 - 16:47:53 CDT)
- Re: AMBER: Problem with running Sander Lili Peng (Tue Jul 10 2007 - 16:50:45 CDT)
- Re: AMBER: Could not find cntrl namelist Robert Duke (Tue Jul 10 2007 - 16:57:54 CDT)
- Re: AMBER: extract protein energy from MD trajectory Carlos Simmerling (Tue Jul 10 2007 - 17:08:32 CDT)
- Re: AMBER: Could not find cntrl namelist M. L. Dodson (Tue Jul 10 2007 - 17:25:17 CDT)
- Re: AMBER: Problem with running Sander David A. Case (Tue Jul 10 2007 - 17:39:31 CDT)
- Re: AMBER: Problem with running Sander Lili Peng (Tue Jul 10 2007 - 17:58:22 CDT)
- Re: AMBER: Problem with running Sander Lili Peng (Tue Jul 10 2007 - 18:01:11 CDT)
- Re: AMBER: Could not find cntrl namelist David A. Case (Tue Jul 10 2007 - 18:04:15 CDT)
- Re: AMBER: Problem with running Sander David A. Case (Tue Jul 10 2007 - 18:17:56 CDT)
- RE: AMBER: Problem with running Sander Ross Walker (Tue Jul 10 2007 - 18:09:29 CDT)
- RE: AMBER: Could not find cntrl namelist Ross Walker (Tue Jul 10 2007 - 18:00:38 CDT)
- RE: AMBER: Could not find cntrl namelist Ross Walker (Tue Jul 10 2007 - 16:57:39 CDT)
- Re: AMBER: adding water molecules in lipid bilayer model Vijay Manickam Achari (Tue Jul 10 2007 - 21:00:30 CDT)
- Re: AMBER: Could not find cntrl namelist Robert Duke (Tue Jul 10 2007 - 21:21:07 CDT)
- Re: AMBER: manganese ion neetu_at_imtech.res.in (Tue Jul 10 2007 - 23:03:54 CDT)
- AMBER: MPI Quiescence problem in REMD In Hee Park (Tue Jul 10 2007 - 23:03:08 CDT)
- Re: AMBER: Input required for RESP FyD (Wed Jul 11 2007 - 01:21:42 CDT)
- Re: AMBER: extract protein energy from MD trajectory Mikyung (Wed Jul 11 2007 - 01:58:31 CDT)
- Re: AMBER: Could not find cntrl namelist Francesco Pietra (Wed Jul 11 2007 - 01:48:41 CDT)
- Re: AMBER: extract protein energy from MD trajectory Carlos Simmerling (Wed Jul 11 2007 - 03:34:31 CDT)
- AMBER: Question about NAB (Nucleic Acid Builder) Cenk Andac (Wed Jul 11 2007 - 03:30:18 CDT)
- Re: AMBER: MPI Quiescence problem in REMD Carlos Simmerling (Wed Jul 11 2007 - 04:28:56 CDT)
- Re: AMBER: Could not find cntrl namelist Francesco Pietra (Wed Jul 11 2007 - 05:14:51 CDT)
- Re: AMBER: Could not find cntrl namelist Robert Duke (Wed Jul 11 2007 - 08:07:36 CDT)
- AMBER: question about iwrap Kailee (Wed Jul 11 2007 - 08:17:29 CDT)
- Re: AMBER: MPI Quiescence problem in REMD In Hee Park (Wed Jul 11 2007 - 11:41:47 CDT)
- Re: AMBER: MPI Quiescence problem in REMD Carlos Simmerling (Wed Jul 11 2007 - 12:08:23 CDT)
- RE: AMBER: Could not find cntrl namelist Francesco Pietra (Wed Jul 11 2007 - 01:48:59 CDT)
- Re:Re: AMBER: ????pig5678?????? pig5678 (Tue Jul 10 2007 - 22:27:55 CDT)
- Re: AMBER: Could not find cntrl namelist Francesco Pietra (Wed Jul 11 2007 - 10:10:42 CDT)
- Re: AMBER: Could not find cntrl namelist Robert Duke (Wed Jul 11 2007 - 12:47:57 CDT)
- AMBER: Belly Restraints and Distance Restraints Seth Lilavivat (Wed Jul 11 2007 - 14:13:04 CDT)
- AMBER: Basic AMBER question Lili Peng (Wed Jul 11 2007 - 14:15:48 CDT)
- Re: AMBER: Basic AMBER question Melinda Layten (Wed Jul 11 2007 - 15:05:11 CDT)
- RE: AMBER: Basic AMBER question Ross Walker (Wed Jul 11 2007 - 15:07:42 CDT)
- Re: AMBER: manganese ion Davide Moiani (Wed Jul 11 2007 - 16:47:18 CDT)
- Re: AMBER: Could not find cntrl namelist Francesco Pietra (Wed Jul 11 2007 - 16:50:37 CDT)
- Fwd: Re: AMBER: Could not find cntrl namelist Francesco Pietra (Wed Jul 11 2007 - 16:52:25 CDT)
- Re: AMBER: question about iwrap David A. Case (Wed Jul 11 2007 - 18:24:11 CDT)
- Re: AMBER: Question about NAB (Nucleic Acid Builder) David A. Case (Wed Jul 11 2007 - 18:23:05 CDT)
- AMBER: computational Ala scan Sergio Wong (Wed Jul 11 2007 - 18:36:58 CDT)
- Re: AMBER: program bug? M. Maeda (Wed Jul 11 2007 - 23:47:19 CDT)
- Re: AMBER: program bug? M. Maeda (Wed Jul 11 2007 - 23:41:34 CDT)
- Re: AMBER: program bug? Benjamin Juhl (Thu Jul 12 2007 - 02:17:31 CDT)
- Re: AMBER: question about iwrap Kailee (Thu Jul 12 2007 - 05:55:28 CDT)
- Re: AMBER: program bug? M. Maeda (Thu Jul 12 2007 - 06:29:03 CDT)
- Re: AMBER: question about iwrap Carlos Simmerling (Thu Jul 12 2007 - 06:34:08 CDT)
- Re: AMBER: question about iwrap Kailee (Thu Jul 12 2007 - 08:17:32 CDT)
- Re: AMBER: question about iwrap Carlos Simmerling (Thu Jul 12 2007 - 08:28:29 CDT)
- Re: AMBER: question about iwrap Kailee (Thu Jul 12 2007 - 08:55:06 CDT)
- Re: AMBER: program bug? David A. Case (Thu Jul 12 2007 - 10:22:35 CDT)
- Re: AMBER: program bug? Carlos Simmerling (Thu Jul 12 2007 - 10:32:54 CDT)
- AMBER: Amber9 analyze timecorr manual ambigous Nicolas Lux Fawzi (Thu Jul 12 2007 - 14:26:19 CDT)
- Re: AMBER: Amber9 analyze timecorr manual ambigous David A. Case (Thu Jul 12 2007 - 14:55:15 CDT)
- AMBER: Molecular Dynamic Simulations using TIP4P water - Please Help Hashem Taha (Thu Jul 12 2007 - 15:31:59 CDT)
- Re: AMBER: Molecular Dynamic Simulations using TIP4P water - Please Help Robert Duke (Thu Jul 12 2007 - 15:55:15 CDT)
- Re: AMBER: Molecular Dynamic Simulations using TIP4P water - Please Help Hashem Taha (Thu Jul 12 2007 - 16:45:50 CDT)
- RE: AMBER: Molecular Dynamic Simulations using TIP4P water - Please Help Ross Walker (Thu Jul 12 2007 - 17:06:56 CDT)
- Re: AMBER: Amber9 analyze timecorr manual ambigous Nicolas Lux Fawzi (Thu Jul 12 2007 - 17:11:30 CDT)
- Re: AMBER: Amber9 analyze timecorr manual ambigous David A. Case (Thu Jul 12 2007 - 17:58:30 CDT)
- Re: AMBER: Molecular Dynamic Simulations using TIP4P water - Please Help David A. Case (Thu Jul 12 2007 - 18:03:45 CDT)
- Re:Re: AMBER: ????pig5678?????? pig5678 (Thu Jul 12 2007 - 20:36:10 CDT)
- AMBER: related to new amber force field snoze pa (Fri Jul 13 2007 - 10:57:38 CDT)
- AMBER: Multiple residues position snoze pa (Fri Jul 13 2007 - 11:04:59 CDT)
- AMBER: Cutoff list exceeds largest sphere in unit cell Andrew Borgert (Fri Jul 13 2007 - 11:18:05 CDT)
- Re: AMBER: Multiple residues position Carlos Simmerling (Fri Jul 13 2007 - 11:20:19 CDT)
- Re: AMBER: Cutoff list exceeds largest sphere in unit cell Andrew Borgert (Fri Jul 13 2007 - 11:27:44 CDT)
- Re: AMBER: Cutoff list exceeds largest sphere in unit cell Robert Duke (Fri Jul 13 2007 - 11:30:40 CDT)
- Re: AMBER: related to new amber force field Carlos Simmerling (Fri Jul 13 2007 - 11:33:12 CDT)
- Re: AMBER: Cutoff list exceeds largest sphere in unit cell Barbault Florent (Fri Jul 13 2007 - 13:54:36 CDT)
- AMBER: Ne van del waals potential Lishan Yao (Fri Jul 13 2007 - 11:09:37 CDT)
- AMBER: MPI script Taryn Hartley (Fri Jul 13 2007 - 17:06:45 CDT)
- Re: AMBER: MPI script Carlos Simmerling (Fri Jul 13 2007 - 17:15:36 CDT)
- Re: AMBER: MPI script Thomas Cheatham III (Fri Jul 13 2007 - 17:19:37 CDT)
- Re: AMBER: Cutoff list exceeds largest sphere in unit cell neville forlemu (Sat Jul 14 2007 - 21:09:36 CDT)
- Re: AMBER: Non bond list overflow David A. Case (Sun Jul 15 2007 - 18:50:11 CDT)
- AMBER: can open PDB file in xleap Vijay Manickam Achari (Sun Jul 15 2007 - 20:44:17 CDT)
- AMBER: Can't open PDB file in xleap Vijay Manickam Achari (Mon Jul 16 2007 - 04:43:16 CDT)
- Re: AMBER: Can t open PDB file in xleap Benjamin Juhl (Mon Jul 16 2007 - 05:53:16 CDT)
- AMBER: convergence in classical MD Seongeun Yang (Mon Jul 16 2007 - 06:23:01 CDT)
- Re: AMBER: convergence in classical MD Carlos Simmerling (Mon Jul 16 2007 - 06:37:09 CDT)
- AMBER: Problems simulating a big system Jordi Camps (Mon Jul 16 2007 - 06:55:55 CDT)
- AMBER: Atoms in conatct to a specific atoms during MD Rafi Ahmad (Mon Jul 16 2007 - 08:23:38 CDT)
- AMBER: modelling substrate binding Mattias Blomberg (Mon Jul 16 2007 - 08:53:15 CDT)
- AMBER: Non-standard amino acid residue Sergey Samsonov (Mon Jul 16 2007 - 09:44:32 CDT)
- Re: AMBER: Atoms in contact to a specific atoms during MD Mark Williamson (Mon Jul 16 2007 - 09:52:39 CDT)
- SV: AMBER: Atoms in contact to a specific atoms during MD Rafi Ahmad (Mon Jul 16 2007 - 10:04:46 CDT)
- Re: SV: AMBER: Atoms in contact to a specific atoms during MD Mark Williamson (Mon Jul 16 2007 - 10:18:00 CDT)
- AMBER: help with phosphotyrosine Samantha Kaye (Mon Jul 16 2007 - 10:45:36 CDT)
- Re: AMBER: Non-standard amino acid residue FyD (Mon Jul 16 2007 - 11:45:07 CDT)
- AMBER: Setting nonbonded cutoff to 1 Hayden Eastwood (Mon Jul 16 2007 - 12:27:45 CDT)
- RE: AMBER: Setting nonbonded cutoff to 1 Ross Walker (Mon Jul 16 2007 - 12:43:28 CDT)
- Re: AMBER: help with phosphotyrosine David A. Case (Mon Jul 16 2007 - 13:11:51 CDT)
- AMBER: Known residue, unknown error in teLeap Neelanjana Sengupta (Mon Jul 16 2007 - 14:19:07 CDT)
- AMBER: RESP_compilation Karol Kaszuba (Mon Jul 16 2007 - 14:14:32 CDT)
- Re: SV: AMBER: Atoms in contact to a specific atoms during MD Bill Ross (Mon Jul 16 2007 - 14:49:45 CDT)
- Re: AMBER: Specific/Non-specific dihedral issue in Amber Narayanan Veeraraghavan (Mon Jul 16 2007 - 16:35:53 CDT)
- Re: AMBER: RESP_compilation FyD (Mon Jul 16 2007 - 17:55:20 CDT)
- Re: AMBER: RESP_compilation FyD (Mon Jul 16 2007 - 17:59:06 CDT)
- Re: AMBER: Specific/Non-specific dihedral issue in Amber Bill Ross (Mon Jul 16 2007 - 18:38:26 CDT)
- AMBER: refc error Lili Peng (Mon Jul 16 2007 - 18:56:11 CDT)
- AMBER: potential energy calculation Lili Peng (Mon Jul 16 2007 - 19:03:55 CDT)
- Re: AMBER: refc error Davide Moiani (Mon Jul 16 2007 - 19:03:42 CDT)
- Re: AMBER: refc error Lili Peng (Mon Jul 16 2007 - 19:08:18 CDT)
- Re: AMBER: Specific/Non-specific dihedral issue in Amber David A. Case (Mon Jul 16 2007 - 19:13:45 CDT)
- Re: AMBER: refc error Davide Moiani (Mon Jul 16 2007 - 19:17:18 CDT)
- Re: AMBER: refc error David A. Case (Mon Jul 16 2007 - 19:25:20 CDT)
- Re: AMBER: Known residue, unknown error in teLeap David A. Case (Mon Jul 16 2007 - 20:32:16 CDT)
- Re: AMBER: potential energy calculation Carlos Simmerling (Mon Jul 16 2007 - 20:34:01 CDT)
- Re: AMBER: Problems simulating a big system David A. Case (Mon Jul 16 2007 - 20:44:09 CDT)
- AMBER: Gaff Charge Colby C (Mon Jul 16 2007 - 22:39:15 CDT)
- AMBER: how to create an O linked N-acetylglucosamine in a protein ming hui (Mon Jul 16 2007 - 22:41:40 CDT)
- AMBER: Re: how to create an O linked N-acetylglucosamine in a protein ming hui (Mon Jul 16 2007 - 22:44:08 CDT)
- Re: AMBER: Gaff Charge David A. Case (Tue Jul 17 2007 - 00:18:17 CDT)
- Re: AMBER: Re: how to create an O linked N-acetylglucosamine in a Austin B. Yongye (Tue Jul 17 2007 - 01:22:12 CDT)
- Re: AMBER: RESP_compilation_IT_WORKS Karol Kaszuba (Tue Jul 17 2007 - 03:32:59 CDT)
- Re: AMBER: Problems simulating a big system Jordi Camps (Tue Jul 17 2007 - 04:57:13 CDT)
- Re: AMBER: Non-standard amino acid residue Sergey Samsonov (Tue Jul 17 2007 - 07:30:14 CDT)
- Re: AMBER: help with phosphotyrosine Samantha Kaye (Tue Jul 17 2007 - 08:00:23 CDT)
- Re: AMBER: Non-standard amino acid residue FyD (Tue Jul 17 2007 - 08:41:57 CDT)
- Re: AMBER: Re: how to create an O linked N-acetylglucosamine in a protein Karl Kirschner (Tue Jul 17 2007 - 08:39:43 CDT)
- Re: AMBER: Non-standard amino acid residue David A. Case (Tue Jul 17 2007 - 09:53:46 CDT)
- Re: AMBER: Non-standard amino acid residue Sergey Samsonov (Tue Jul 17 2007 - 10:37:03 CDT)
- Re: AMBER: Known residue, unknown error in teLeap Neelanjana Sengupta (Tue Jul 17 2007 - 11:33:39 CDT)
- Re: AMBER: Known residue, unknown error in teLeap David A. Case (Tue Jul 17 2007 - 11:49:41 CDT)
- Re: AMBER: Known residue, unknown error in teLeap Neelanjana Sengupta (Tue Jul 17 2007 - 13:53:16 CDT)
- Re: AMBER: Known residue, unknown error in teLeap Neelanjana Sengupta (Tue Jul 17 2007 - 13:58:12 CDT)
- Re: AMBER: MPI script Hashem Taha (Tue Jul 17 2007 - 15:10:46 CDT)
- Re: AMBER: refc error Lili Peng (Tue Jul 17 2007 - 13:35:06 CDT)
- Re: AMBER: refc error Davide Moiani (Tue Jul 17 2007 - 16:00:20 CDT)
- Re: AMBER: Specific/Non-specific dihedral issue in Amber Narayanan Veeraraghavan (Tue Jul 17 2007 - 17:01:10 CDT)
- Re: AMBER: refc error Lili Peng (Tue Jul 17 2007 - 17:40:26 CDT)
- Re: AMBER: potential energy calculation Lili Peng (Tue Jul 17 2007 - 17:46:55 CDT)
- AMBER: General AMBER questions Lili Peng (Tue Jul 17 2007 - 17:51:32 CDT)
- AMBER: incoherent intermediate scattering function Jason Whitte (Tue Jul 17 2007 - 17:59:21 CDT)
- Re: AMBER: potential energy calculation David A. Case (Tue Jul 17 2007 - 18:08:54 CDT)
- Re: AMBER: Specific/Non-specific dihedral issue in Amber David A. Case (Tue Jul 17 2007 - 18:15:59 CDT)
- Re: AMBER: potential energy calculation Rajendra P. OJHA (Wed Jul 18 2007 - 01:03:55 CDT)
- AMBER: Problems during compilation Sébastien Kozlowskyj (Wed Jul 18 2007 - 04:26:06 CDT)
- Re: AMBER: Non-standard amino acid residue Sergey Samsonov (Wed Jul 18 2007 - 09:19:42 CDT)
- Re: AMBER: Non-standard amino acid residue FyD (Wed Jul 18 2007 - 09:50:55 CDT)
- AMBER: bound magnesium ions in proteins with GBSA Wei Chen (Wed Jul 18 2007 - 11:01:26 CDT)
- AMBER: Error during compilation on a SGI Irix machine Ruchi Sachdeva (Wed Jul 18 2007 - 11:47:30 CDT)
- Re: AMBER: Error during compilation on a SGI Irix machine Carlos Simmerling (Wed Jul 18 2007 - 11:57:27 CDT)
- AMBER: running_RED-III Karol Kaszuba (Wed Jul 18 2007 - 14:02:10 CDT)
- Re: AMBER: potential energy calculation Lili Peng (Wed Jul 18 2007 - 15:47:57 CDT)
- AMBER: Verifying Bond Angles Seth Lilavivat (Wed Jul 18 2007 - 16:32:30 CDT)
- Re: AMBER: General AMBER questions David A. Case (Wed Jul 18 2007 - 18:12:34 CDT)
- Re: AMBER: running_RED-III FyD (Wed Jul 18 2007 - 20:33:20 CDT)
- Re: AMBER: Error during compilation on a SGI Irix machine Ruchi Sachdeva (Wed Jul 18 2007 - 23:18:30 CDT)
- Re: AMBER: Error during compilation on a SGI Irix machine David A. Case (Wed Jul 18 2007 - 23:34:18 CDT)
- AMBER: (no subject) n.buis_at_soton.ac.uk (Thu Jul 19 2007 - 03:58:06 CDT)
- Re: AMBER: Non-standard amino acid residue Sergey Samsonov (Thu Jul 19 2007 - 04:45:52 CDT)
- Re: AMBER: Non-standard amino acid residue FyD (Thu Jul 19 2007 - 06:26:39 CDT)
- AMBER: Re: amber-developers: -y option in sander Geoff Wood (Thu Jul 19 2007 - 08:54:47 CDT)
- AMBER: DNA RNA recognition problem Steve Seibold (Thu Jul 19 2007 - 08:51:43 CDT)
- Re: AMBER: DNA RNA recognition problem David A. Case (Thu Jul 19 2007 - 10:01:17 CDT)
- AMBER: secstruct command Anna Díaz Cirac (Thu Jul 19 2007 - 12:35:42 CDT)
- Re: AMBER: secstruct command Carlos Simmerling (Thu Jul 19 2007 - 12:46:30 CDT)
- Re: AMBER: secstruct command Holger Gohlke (Thu Jul 19 2007 - 13:22:37 CDT)
- AMBER: temperature fluctuation in REMD priya priya (Fri Jul 20 2007 - 05:58:48 CDT)
- Re: AMBER: temperature fluctuation in REMD Carlos Simmerling (Fri Jul 20 2007 - 06:44:36 CDT)
- Re: AMBER: temperature fluctuation in REMD priya priya (Fri Jul 20 2007 - 07:11:17 CDT)
- Re: AMBER: temperature fluctuation in REMD Carlos Simmerling (Fri Jul 20 2007 - 07:34:03 CDT)
- Re: AMBER: temperature fluctuation in REMD Adrian Roitberg (Fri Jul 20 2007 - 07:44:01 CDT)
- Re: AMBER: temperature fluctuation in REMD priya priya (Fri Jul 20 2007 - 08:13:32 CDT)
- Re: AMBER: temperature fluctuation in REMD priya priya (Fri Jul 20 2007 - 08:36:12 CDT)
- Re: AMBER: secstruct command Tim Meyer (Fri Jul 20 2007 - 08:55:47 CDT)
- Re: AMBER: temperature fluctuation in REMD Carlos Simmerling (Fri Jul 20 2007 - 08:57:13 CDT)
- Re: AMBER: temperature fluctuation in REMD priya priya (Fri Jul 20 2007 - 09:23:08 CDT)
- Re: AMBER: temperature fluctuation in REMD Carlos Simmerling (Fri Jul 20 2007 - 09:34:35 CDT)
- Re: AMBER: temperature fluctuation in REMD priya priya (Fri Jul 20 2007 - 10:00:30 CDT)
- Re: AMBER: temperature fluctuation in REMD David A. Case (Fri Jul 20 2007 - 11:16:46 CDT)
- AMBER: ptraj error FyD (Fri Jul 20 2007 - 16:21:17 CDT)
- RE: AMBER: problem in installing amber9 Syed Tarique Moin (Sat Jul 21 2007 - 00:18:05 CDT)
- AMBER: problem in compiling amber9 and running amber9 Prem Prakash Pathak (Sat Jul 21 2007 - 07:27:18 CDT)
- Re: AMBER: problem in compiling amber9 and running amber9 Mark Williamson (Sat Jul 21 2007 - 09:21:18 CDT)
- AMBER: RE Amber: Simulated Annealing Francesco Pietra (Sat Jul 21 2007 - 10:13:11 CDT)
- AMBER: GDP UNKNOWN ATOM TYPE: O3 warning j j (Sat Jul 21 2007 - 12:21:32 CDT)
- AMBER: offending restraint Jena M (Sat Jul 21 2007 - 19:15:42 CDT)
- Re: AMBER: offending restraint David A. Case (Sat Jul 21 2007 - 20:35:51 CDT)
- Re: AMBER: offending restraint Carlos Simmerling (Sun Jul 22 2007 - 06:32:51 CDT)
- AMBER: question about formatted mdrcrd files... Cenk Andac (Sun Jul 22 2007 - 11:47:45 CDT)
- Re: AMBER: question about formatted mdrcrd files... David A. Case (Sun Jul 22 2007 - 18:30:06 CDT)
- Re: AMBER: question about formatted mdrcrd files... Cenk Andac (Sun Jul 22 2007 - 19:51:02 CDT)
- Re: AMBER: question about formatted mdrcrd files... Cenk Andac (Sun Jul 22 2007 - 20:37:43 CDT)
- AMBER: Truncated Octahedron box volume Ilyas Yildirim (Sun Jul 22 2007 - 21:52:16 CDT)
- AMBER: using amber to minimize structure obatined from cyana Prem Prakash Pathak (Mon Jul 23 2007 - 02:27:26 CDT)
- AMBER: parallel compilation Francesco Pietra (Mon Jul 23 2007 - 05:16:35 CDT)
- AMBER: regarding distance restraints gurpreet singh (Mon Jul 23 2007 - 05:46:39 CDT)
- Re: AMBER: regarding distance restraints Carlos Simmerling (Mon Jul 23 2007 - 06:26:27 CDT)
- AMBER: Re: RED problem Sergey Samsonov (Mon Jul 23 2007 - 06:35:32 CDT)
- Re: AMBER: Re: RED problem FyD (Mon Jul 23 2007 - 07:08:14 CDT)
- AMBER: SHAKE failure in TI calculation of zero sum model system of "ethane-to-ethane" in water Ye Mei (Mon Jul 23 2007 - 08:00:34 CDT)
- Re: AMBER: parallel compilation David A. Case (Mon Jul 23 2007 - 09:55:02 CDT)
- Re: AMBER: using amber to minimize structure obatined from cyana David A. Case (Mon Jul 23 2007 - 09:52:00 CDT)
- Re: AMBER: regarding distance restraints David A. Case (Mon Jul 23 2007 - 09:56:03 CDT)
- AMBER: RE: Query Ross Walker (Mon Jul 23 2007 - 10:13:13 CDT)
- AMBER: problem in compiling amber with suse 9.1 i686, finally in leap Prem Prakash Pathak (Mon Jul 23 2007 - 10:39:21 CDT)
- Re: AMBER: problem in compiling amber with suse 9.1 i686, finally in leap Steven Winfield (Mon Jul 23 2007 - 10:43:17 CDT)
- RE: AMBER: problem in compiling amber with suse 9.1 i686, finally in leap Ross Walker (Mon Jul 23 2007 - 10:52:00 CDT)
- AMBER: md potential energy Francesco Pietra (Mon Jul 23 2007 - 11:14:48 CDT)
- Re: AMBER: netcdf support needed (Amber 9, sander imin = 5, -y flag) Geoff Wood (Mon Jul 23 2007 - 12:23:46 CDT)
- AMBER: MPI error message Taryn Hartley (Mon Jul 23 2007 - 12:39:27 CDT)
- RE: AMBER: MPI error message Ross Walker (Mon Jul 23 2007 - 12:56:35 CDT)
- AMBER: DNA denatures during MD simulation Prashanth Athri (Mon Jul 23 2007 - 14:38:12 CDT)
- Re: AMBER: DNA denatures during MD simulation Carlos Simmerling (Mon Jul 23 2007 - 14:44:35 CDT)
- Re: AMBER: DNA denatures during MD simulation Thomas Cheatham (Mon Jul 23 2007 - 14:49:49 CDT)
- Re: AMBER: DNA denatures during MD simulation Prashanth Athri (Mon Jul 23 2007 - 17:51:32 CDT)
- AMBER: Bug report: a bug of xleap associated with NumLock Ye Mei (Tue Jul 24 2007 - 01:15:27 CDT)
- Re: AMBER: parallel compilation Francesco Pietra (Tue Jul 24 2007 - 01:19:56 CDT)
- Re: Re: AMBER: parallel compilation Ye Mei (Tue Jul 24 2007 - 01:44:43 CDT)
- Re: Re: AMBER: parallel compilation Francesco Pietra (Tue Jul 24 2007 - 02:17:03 CDT)
- Fwd: Re: Re: AMBER: parallel compilation Francesco Pietra (Tue Jul 24 2007 - 02:19:58 CDT)
- Re: Fwd: Re: Re: AMBER: parallel compilation Ye Mei (Tue Jul 24 2007 - 05:07:31 CDT)
- Re: Fwd: Re: Re: AMBER: parallel compilation Ye Mei (Tue Jul 24 2007 - 05:15:28 CDT)
- Re: AMBER: problem in compiling amber with suse 9.1 i686, finally in leap Prem Prakash Pathak (Tue Jul 24 2007 - 07:30:31 CDT)
- Re: Fwd: Re: Re: AMBER: parallel compilation Francesco Pietra (Tue Jul 24 2007 - 09:07:10 CDT)
- AMBER: not getting topology and restraint file Prem Prakash Pathak (Tue Jul 24 2007 - 09:09:40 CDT)
- Re: Re: Fwd: Re: Re: AMBER: parallel compilation Ye Mei (Tue Jul 24 2007 - 09:26:26 CDT)
- Re: AMBER: not getting topology and restraint file Carlos Simmerling (Tue Jul 24 2007 - 09:46:49 CDT)
- Re: Re: Fwd: Re: Re: AMBER: parallel compilation Francesco Pietra (Tue Jul 24 2007 - 10:02:01 CDT)
- Re: AMBER: Bug report: a bug of xleap associated with NumLock David A. Case (Tue Jul 24 2007 - 10:16:07 CDT)
- Re: AMBER: problem in compiling amber with suse 9.1 i686, finally in leap David A. Case (Tue Jul 24 2007 - 10:20:30 CDT)
- AMBER: FW: MPI error message Taryn Hartley (Tue Jul 24 2007 - 14:00:25 CDT)
- RE: AMBER: FW: MPI error message Gustavo Seabra (Tue Jul 24 2007 - 14:32:52 CDT)
- RE: AMBER: FW: MPI error message Ross Walker (Tue Jul 24 2007 - 16:31:12 CDT)
- AMBER: MD simulation error Lili Peng (Tue Jul 24 2007 - 18:53:59 CDT)
- Re: AMBER: MD simulation error David A. Case (Tue Jul 24 2007 - 19:55:09 CDT)
- RE: AMBER: MD simulation error Ross Walker (Tue Jul 24 2007 - 20:01:13 CDT)
- Re: Re: Re: Fwd: Re: Re: AMBER: parallel compilation Ye Mei (Tue Jul 24 2007 - 21:27:04 CDT)
- Re: AMBER: not getting topology and restraint file Prem Prakash Pathak (Tue Jul 24 2007 - 23:11:00 CDT)
- Re: AMBER: problem in compiling amber with suse 9.1 i686, finally in leap Prem Prakash Pathak (Tue Jul 24 2007 - 23:12:48 CDT)
- Re: Re: Re: Fwd: Re: Re: AMBER: parallel compilation Francesco Pietra (Wed Jul 25 2007 - 01:10:17 CDT)
- AMBER: Amber9 parallel compilation openmpi issues Francesco Pietra (Wed Jul 25 2007 - 01:24:22 CDT)
- Re: AMBER: not getting topology and restraint file Carlos Simmerling (Wed Jul 25 2007 - 05:16:02 CDT)
- AMBER: Bad residue/molecule data in prmtop neva_at_mmb.pcb.ub.es (Wed Jul 25 2007 - 08:03:19 CDT)
- AMBER: Fwd: Amber9 parallel compilation openmpi issues Francesco Pietra (Wed Jul 25 2007 - 08:24:10 CDT)
- Re: AMBER: Amber9 parallel compilation openmpi issues Mark Williamson (Wed Jul 25 2007 - 08:33:35 CDT)
- Re: AMBER: not getting topology and restraint file Prem Prakash Pathak (Wed Jul 25 2007 - 08:45:57 CDT)
- Re: AMBER: Amber9 parallel compilation openmpi issues Francesco Pietra (Wed Jul 25 2007 - 09:00:58 CDT)
- RE: AMBER: Bad residue/molecule data in prmtop Ross Walker (Wed Jul 25 2007 - 09:17:00 CDT)
- Re: AMBER: Amber9 parallel compilation openmpi issues Benjamin Juhl (Wed Jul 25 2007 - 09:18:28 CDT)
- Re: AMBER: Amber9 parallel compilation openmpi issues Francesco Pietra (Wed Jul 25 2007 - 09:44:46 CDT)
- AMBER: crg file umbrita itl (Wed Jul 25 2007 - 09:43:17 CDT)
- RE: AMBER: Fwd: Amber9 parallel compilation openmpi issues Ross Walker (Wed Jul 25 2007 - 10:25:58 CDT)
- RE: AMBER: crg file Ross Walker (Wed Jul 25 2007 - 10:26:28 CDT)
- Re: AMBER: Amber9 parallel compilation openmpi issues Mark Williamson (Wed Jul 25 2007 - 10:28:06 CDT)
- AMBER: RE: Contact TSRI: Ross Walker Ross Walker (Wed Jul 25 2007 - 10:31:53 CDT)
- RE: AMBER:charge file umbrita itl (Wed Jul 25 2007 - 10:36:11 CDT)
- Re: AMBER: Amber9 parallel compilation openmpi issues David A. Case (Wed Jul 25 2007 - 11:09:18 CDT)
- RE: AMBER: Fwd: Amber9 parallel compilation openmpi issues Francesco Pietra (Wed Jul 25 2007 - 12:07:15 CDT)
- Re: AMBER: Fwd: Amber9 parallel compilation openmpi issues David A. Case (Wed Jul 25 2007 - 12:36:43 CDT)
- Re: AMBER: MD simulation error Lili Peng (Wed Jul 25 2007 - 12:38:10 CDT)
- Re: AMBER: MD simulation error Carlos Simmerling (Wed Jul 25 2007 - 12:41:42 CDT)
- RE: AMBER: MD simulation error Ross Walker (Wed Jul 25 2007 - 12:54:30 CDT)
- Re: AMBER: MD simulation error Lili Peng (Wed Jul 25 2007 - 13:21:24 CDT)
- Re: AMBER: Fwd: Amber9 parallel compilation openmpi issues Mark Williamson (Wed Jul 25 2007 - 14:19:29 CDT)
- Re: AMBER: Fwd: Amber9 parallel compilation openmpi issues David A. Case (Wed Jul 25 2007 - 14:56:24 CDT)
- Re: AMBER: Fwd: Amber9 parallel compilation openmpi issues Francesco Pietra (Wed Jul 25 2007 - 15:43:08 CDT)
- Re: AMBER: Fwd: Amber9 parallel compilation openmpi issues David A. Case (Wed Jul 25 2007 - 16:32:32 CDT)
- Fwd: Re: AMBER: Fwd: Amber9 parallel compilation openmpi issues Francesco Pietra (Wed Jul 25 2007 - 17:01:40 CDT)
- Re: AMBER: Fwd: Amber9 parallel compilation openmpi issues Mark Williamson (Wed Jul 25 2007 - 17:20:37 CDT)
- Re: AMBER: Fwd: Amber9 parallel compilation openmpi issues David A. Case (Wed Jul 25 2007 - 17:48:55 CDT)
- AMBER: rmsd residue wise ravishk kumar (Thu Jul 26 2007 - 08:02:20 CDT)
- AMBER: methods to approach two atoms Jena M (Thu Jul 26 2007 - 08:53:09 CDT)
- AMBER: RE: A little question Ross Walker (Thu Jul 26 2007 - 09:51:55 CDT)
- AMBER: about wrap the trajectory Rachel (Thu Jul 26 2007 - 11:18:32 CDT)
- Re: AMBER: about wrap the trajectory Carlos Simmerling (Thu Jul 26 2007 - 11:28:33 CDT)
- Re: AMBER: about wrap the trajectory Rachel (Thu Jul 26 2007 - 11:43:48 CDT)
- AMBER: adding organic molecule to polypeptide residue Lili Peng (Thu Jul 26 2007 - 17:36:29 CDT)
- Re: AMBER: about wrap the trajectory Carlos Simmerling (Fri Jul 27 2007 - 06:29:48 CDT)
- Re: AMBER: about wrap the trajectory Rachel (Fri Jul 27 2007 - 09:08:23 CDT)
- Re: AMBER: about wrap the trajectory Carlos Simmerling (Fri Jul 27 2007 - 09:23:30 CDT)
- Re: AMBER: about wrap the trajectory Rachel (Fri Jul 27 2007 - 09:38:12 CDT)
- AMBER: FLAG LENNARD_JONES_ACOEF NAN Greg Gannon (Fri Jul 27 2007 - 09:41:46 CDT)
- Re: AMBER: about wrap the trajectory Carlos Simmerling (Fri Jul 27 2007 - 09:44:53 CDT)
- Re: AMBER: about wrap the trajectory Rachel (Fri Jul 27 2007 - 09:52:50 CDT)
- Re: AMBER: FLAG LENNARD_JONES_ACOEF NAN David A. Case (Fri Jul 27 2007 - 10:19:49 CDT)
- AMBER: RE: Query Ross Walker (Fri Jul 27 2007 - 10:24:56 CDT)
- Re: AMBER: FLAG LENNARD_JONES_ACOEF NAN Greg Gannon (Fri Jul 27 2007 - 10:55:52 CDT)
- Re: AMBER: about wrap the trajectory Carlos Simmerling (Fri Jul 27 2007 - 11:10:49 CDT)
- Re: AMBER: adding organic molecule to polypeptide residue FyD (Sat Jul 28 2007 - 04:05:18 CDT)
- AMBER: errors in SHIFTS execution Tom Pochapsky (Sat Jul 28 2007 - 06:58:57 CDT)
- AMBER: PCA with ptraj ravishk kumar (Sat Jul 28 2007 - 07:02:13 CDT)
- Re: AMBER: PCA with ptraj Chris Moth (Sun Jul 29 2007 - 07:27:32 CDT)
- Re: AMBER: errors in SHIFTS execution David A. Case (Sun Jul 29 2007 - 10:44:05 CDT)
- AMBER: thermodynamic data for conformers Francesco Pietra (Sun Jul 29 2007 - 12:11:11 CDT)
- AMBER: what's the problem of "Missing BELE for MM in 1 (residue 246)" in MM-GBSA? tonglei (Sun Jul 29 2007 - 22:45:24 CDT)
- AMBER: heme force field hadi behzadi (Mon Jul 30 2007 - 06:55:07 CDT)
- Re: AMBER: heme force field Marcelo Puiatti (Mon Jul 30 2007 - 08:08:52 CDT)
- Re: AMBER: errors in SHIFTS execution Thomas Pochapsky (Mon Jul 30 2007 - 08:49:47 CDT)
- Re: AMBER: errors in SHIFTS execution Thomas Pochapsky (Mon Jul 30 2007 - 09:06:19 CDT)
- AMBER: QM-MM output interpretation Francesco Pietra (Mon Jul 30 2007 - 09:08:36 CDT)
- AMBER: RE: Problem with sander.MPI Ross Walker (Mon Jul 30 2007 - 09:12:58 CDT)
- Re: AMBER: errors in SHIFTS execution David A. Case (Mon Jul 30 2007 - 10:37:26 CDT)
- RE: AMBER: QM-MM output interpretation Ross Walker (Mon Jul 30 2007 - 10:51:36 CDT)
- AMBER: RE: help:- regarding "perl" in analyzing the simulation Ross Walker (Mon Jul 30 2007 - 11:38:33 CDT)
- Re: AMBER: errors in SHIFTS execution Thomas Pochapsky (Mon Jul 30 2007 - 12:06:04 CDT)
- RE: AMBER: QM-MM output interpretation Francesco Pietra (Mon Jul 30 2007 - 12:59:13 CDT)
- AMBER: QMMM to follow reaction involving water M. L. Dodson (Mon Jul 30 2007 - 13:23:14 CDT)
- RE: AMBER: QMMM to follow reaction involving water Gustavo Seabra (Mon Jul 30 2007 - 14:41:17 CDT)
- AMBER: Problem while saving .top and .crd files. Anju Sharma (Mon Jul 30 2007 - 22:47:39 CDT)
- RE: AMBER: QM-MM output interpretation Ross Walker (Mon Jul 30 2007 - 23:11:50 CDT)
- RE: AMBER: Problem while saving .top and .crd files. Ross Walker (Mon Jul 30 2007 - 23:28:42 CDT)
- RE: AMBER: QMMM to follow reaction involving water Ross Walker (Mon Jul 30 2007 - 23:49:23 CDT)
- RE: AMBER: Average potential energies and conformer ratios Francesco Pietra (Tue Jul 31 2007 - 00:09:02 CDT)
- AMBER: Problem while creating input files in antechamber Anju Sharma (Tue Jul 31 2007 - 00:33:12 CDT)
- Re: AMBER: Problem while creating input files in antechamber Benjamin Juhl (Tue Jul 31 2007 - 02:08:35 CDT)
- AMBER: Linux install Beale, John (Tue Jul 31 2007 - 06:55:34 CDT)
- AMBER: Resp hadi behzadi (Tue Jul 31 2007 - 09:15:15 CDT)
- Re: AMBER: QMMM to follow reaction involving water M. L. Dodson (Tue Jul 31 2007 - 10:14:57 CDT)
- Re: AMBER: Linux install David A. Case (Tue Jul 31 2007 - 10:35:37 CDT)
- AMBER: resp hadi behzadi (Tue Jul 31 2007 - 12:15:37 CDT)
- AMBER: mm_pbsa and energy decomposition (missing BELE for MM in 1) Alessandro Nascimento (Tue Jul 31 2007 - 16:34:12 CDT)
Last message date: Mon Dec 31 2007 - 15:27:41 CST
Archived on: Thu Jan 10 2008 - 17:13:09 CST
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