AMBER Archive (2007)

Subject: AMBER: About amber7

From: Saiful Islam (saiful005_at_gmail.com)
Date: Tue Jul 03 2007 - 08:49:28 CDT

Hi,
I am a user of amber7.I have a problem as follows:

After I have created the initial model, it is a good idea to visually
inspect the model to make sure everything looks reasonable.I have used the
command "ambpdb" to convert the topology and restart file into the pdb
format:
$ ambpdb -p wt1mg.parm7 < wt1mg.crd > wt1mg_solvated.pdb

After this, it says- "ambpdb" command not found.
What can I do then?
Thanks for any help.
-saiful
>From Bangladesh

-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber_at_scripps.edu
To unsubscribe, send "unsubscribe amber" to majordomo_at_scripps.edu