AMBER Archive (2007)

Subject: Re: AMBER: About amber7

From: Carlos Simmerling (carlos.simmerling_at_gmail.com)
Date: Tue Jul 03 2007 - 08:57:14 CDT

look in the exe/ directory of your Amber installation.
If it is there, then you need to specify the location when
you run it (or add the exe dir to your Unic path).
If it is not there, check to see if you compiled it.

On 7/3/07, Saiful Islam <saiful005_at_gmail.com> wrote:
>
> Hi,
> I am a user of amber7.I have a problem as follows:
>
> After I have created the initial model, it is a good idea to visually
> inspect the model to make sure everything looks reasonable.I have used the
> command "ambpdb" to convert the topology and restart file into the pdb
> format:
> $ ambpdb -p wt1mg.parm7 < wt1mg.crd > wt1mg_solvated.pdb
>
> After this, it says- "ambpdb" command not found.
> What can I do then?
> Thanks for any help.
> -saiful
> From Bangladesh
>

-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber_at_scripps.edu
To unsubscribe, send "unsubscribe amber" to majordomo_at_scripps.edu