AMBER Archive (2009)

Subject: Re: [AMBER] retinal lib file, params?

From: Simon Becker (simon.becker_at_uni-konstanz.de)
Date: Mon Nov 02 2009 - 02:34:14 CST

hi mark,

i only know this one:

http://personalpages.manchester.ac.uk/staff/Richard.Bryce/amber/index.html

though no retinal, sorry.

hth
simon

Mark M Huntress schrieb:
> Hi,
>
> I am modeling with MD an unbound retinal in the center of a protein, and it need a lib file for it, and I kind of remember seeing a long time ago a page where people could share parameter files for non-standard residues, but I can't find it again. I figure that someone out there somewhere must have a lib file for retinal. If anyone has parameters for retinal unbound (with CH=O) I would really appreciate it, or if anyone can direct me to that site where files are shared.
> Thanks
>
> Mark
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> 

-- 
Simon Becker
Dept. of Biology
Molecular Bioinformatics
Box M647 
Universitaet Konstanz
D-78457 Konstanz 

mail: simon.becker_at_uni-konstanz.de
Tel: 0049 7531 882900, Fax: 3183

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