AMBER Archive (2009)

Subject: Re: [AMBER] Is it taking too much time

From: manoj singh (mks.amber_at_gmail.com)
Date: Mon Nov 02 2009 - 01:31:07 CST

You can do a quick benchmarking for your system by running few ps
simulations. The simulation time is proportional to the length of the
simulation.

On Mon, Nov 2, 2009 at 1:08 AM, nicholus bhattacharjee <
nicholusbhattacharjee_at_gmail.com> wrote:

> Dear community,
> I am running a protein simulation in my IBM 3400
> server (specification
> http://www-07.ibm.com/systems/in/x/hardware/tower/x3400/specs.html) with
> AMBER 9. My protein is 50 amino acid long. I am doing an explicit solvent
> simulation. Can anybody suggest what is the maximum time needed for this
> simulation.
>
> --
> Nicholus Bhattacharjee
> PhD Scholar
> Department of Chemistry
> University of Delhi
> Delhi-110007 (INDIA)
> Phone: 9873098743(M)
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