AMBER Archive (2009)

Subject: Re: [AMBER] loading PDB of a RNA sequence

From: Carlos Simmerling (carlos.simmerling_at_gmail.com)
Date: Tue Sep 08 2009 - 05:33:57 CDT

it would be easier to help you if we could see the error messages
generated by leap- check the leap.log file.

On Tue, Sep 8, 2009 at 6:31 AM, gunajyoti das<guna_das78_at_yahoo.co.in> wrote:
> Hello amber users'
>  I have tried to load a RNA sequence obtained from the PDB file 1DRZ, but xleap colud not generate the prmtop and inpcrd files. When i tried a DNA sequence i could generate the prmtop and inpcrd files.
>  Please help me how to write the commands for a RNA sequence.
>
>                                                                     Thanks  a lot,
>                                                                                        Gunajyoti
>                                                                                         NEH University.
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>      See the Web's breaking stories, chosen by people like you. Check out Yahoo! Buzz. http://in.buzz.yahoo.com/
> _______________________________________________
> AMBER mailing list
> AMBER_at_ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>

_______________________________________________
AMBER mailing list
AMBER_at_ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber