AMBER Archive (2009)

Subject: [AMBER] loading PDB of a RNA sequence

From: gunajyoti das (guna_das78_at_yahoo.co.in)
Date: Tue Sep 08 2009 - 05:31:47 CDT

Hello amber users'
 I have tried to load a RNA sequence obtained from the PDB file 1DRZ, but xleap colud not generate the prmtop and inpcrd files. When i tried a DNA sequence i could generate the prmtop and inpcrd files.
 Please help me how to write the commands for a RNA sequence.

                                                                    Thanks  a lot,
                                                                                       Gunajyoti
                                                                                        NEH University.

 

      See the Web's breaking stories, chosen by people like you. Check out Yahoo! Buzz. http://in.buzz.yahoo.com/
_______________________________________________
AMBER mailing list
AMBER_at_ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber