AMBER Archive (2009)

Subject: RE: [AMBER] ATP/GTP parameters

From: Steve Seibold (seibold_at_chemistry.msu.edu)
Date: Tue Sep 01 2009 - 06:42:09 CDT

Hi Francios

I would greatly appreciate that! Please do send the ATP, AMP, GTP, GMP and finally dATP and dGTP libraries.

Again, Thanks much.

Cheers, Steve

Steve Seibold
Research Asst. Professor
seibold_at_chemistry.msu.edu
19B Chemistry Building
Michigan State University
East Lansing, MI 48824
Office 517-355-9715 ext 264
 
-----Original Message-----
From: amber-bounces_at_ambermd.org [mailto:amber-bounces_at_ambermd.org] On Behalf Of FyD
Sent: Monday, August 31, 2009 4:21 PM
To: amber_at_ambermd.org
Cc: q4md-fft_at_q4md-forcefieldtools.org
Subject: Re: [AMBER] ATP/GTP parameters

Dear Steve,

> I am looking for GTP parameters and looked in the achieves. I found
> that ATP and GTP had been deposited on the AMBER homepage site.
> However, looking through all the links, I cannot find them. Have
> they been incorporated into the newer force field/parameters? (I
> have AMBER 8 addition.)

If you are interested I can send you ATP, GTP force field libraries or
any co-factors you might be interested in deriving from XYP (X = A, C,
T, G, dA, dC, dT, dG. Y = M D T Q etc... An even more...).

This force field topology database has been developed in a single
R.E.D. job. Many co-factor analogs can be constructed since a building
block approach has been followed. See the list of cafactors built:
http://archive.ambermd.org/200812/0329.html

regards, Francois

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