AMBER Archive (2009)

Subject: Re: [AMBER] how to pull a dna

From: Sam Danziger (sam.danziger_at_gmail.com)
Date: Tue Sep 01 2009 - 06:17:09 CDT

I recommend using MMTSB to prep pdb files before simulation in Amber.

Here is a tutorial:
http://www.mmtsb.org/workshops/mmtsb-ctbp_workshop_2009/Tutorials/MMTSB_InitialSetup/MMTSBInitialSetup.html

-Sam

On Mon, Aug 31, 2009 at 7:39 PM, balaji
nagarajan<balaji_sethu_at_hotmail.com> wrote:
>
> Dear Amber !
>
>        I would like to pull one of the strands of the DNA from the helix ,
> how to do it using amber , if there is any reference for this if so let me know
>
> thanks in advance
>
> regards
> balaji
>
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-- 
Samuel A. Danziger, PhD
Dept. of Biomedical Engineering
University of California
Irvine, CA 92697
sdanzige_at_uci.edu
(908)246-4502
http://samdanziger.com/

Truth Cannot Contradict Truth

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