AMBER Archive (2009)

Subject: Re: [AMBER] ask for parm99MOD

From: Carlos Simmerling (carlos.simmerling_at_gmail.com)
Date: Thu May 28 2009 - 14:56:26 CDT

that's the reference for the GB-OBC model, not for a protein force field....

On Thu, May 28, 2009 at 3:46 PM, xiaoqin huang <xqhuang1018_at_msn.com> wrote:

>
> here is the reference:
>
> PROTEINS: Structure, Function, and Bioinformatics 2004, 55:383–394.
>
>
> > Date: Thu, 28 May 2009 15:44:08 -0400
> > From: roitberg_at_qtp.ufl.edu
> > To: amber_at_ambermd.org
> > Subject: Re: [AMBER] ask for parm99MOD
> >
> > still not enough !can you send us a reference for a paper where you read
> > this ?
> > Adrian
> >
> >
> > xiaoqin huang wrote:
> > > sorry, I mean parm99MOD2, which is good for GB simulations.
> > >
> > >
> > >> Date: Thu, 28 May 2009 15:38:23 -0400
> > >> From: roitberg_at_qtp.ufl.edu
> > >> To: amber_at_ambermd.org
> > >> Subject: Re: [AMBER] ask for parm99MOD
> > >>
> > >> would you mind clarifyng what the parm99MOD is ?
> > >> I have a suspicion that you refer to the hornak et al force field,
> which
> > >> would then can be found in amber as 99SB
> > >>
> > >> Adrian
> > >>
> > >>
> > >>
> > >> xiaoqin huang wrote:
> > >>> got it, modify 4 torsional potentials.
> > >>>
> > >>>
> > >>>
> > >>>> From: xqhuang1018_at_msn.com
> > >>>> To: amber_at_ambermd.org
> > >>>> Date: Thu, 28 May 2009 14:16:35 -0400
> > >>>> Subject: [AMBER] ask for parm99MOD
> > >>>>
> > >>>>
> > >>>> hi, anyone can help me to find where is the parm99MOD set? I need it
> for GB simulations.
> > >>>> thanks a lot
> > >>>>
> > >>>> xiaoqin
> > >>>>
> > >>>> 05/28/2009
> > >>>>
> > >>>>
> > >>>> _________________________________________________________________
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> > Associate Professor
> > Quantum Theory Project
> > Department of Chemistry
> >
> > Senior Editor. Journal of Physical Chemistry
> > American Chemical Society
> >
> > University of Florida PHONE 352 392-6972
> > P.O. Box 118435 FAX 352 392-8722
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