AMBER Archive (2009)

Subject: RE: [AMBER] ask for parm99MOD

From: xiaoqin huang (xqhuang1018_at_msn.com)
Date: Thu May 28 2009 - 14:46:23 CDT

here is the reference:

PROTEINS: Structure, Function, and Bioinformatics 2004, 55:383–394.

> Date: Thu, 28 May 2009 15:44:08 -0400
> From: roitberg_at_qtp.ufl.edu
> To: amber_at_ambermd.org
> Subject: Re: [AMBER] ask for parm99MOD
>
> still not enough !can you send us a reference for a paper where you read
> this ?
> Adrian
>
>
> xiaoqin huang wrote:
> > sorry, I mean parm99MOD2, which is good for GB simulations.
> >
> >
> >> Date: Thu, 28 May 2009 15:38:23 -0400
> >> From: roitberg_at_qtp.ufl.edu
> >> To: amber_at_ambermd.org
> >> Subject: Re: [AMBER] ask for parm99MOD
> >>
> >> would you mind clarifyng what the parm99MOD is ?
> >> I have a suspicion that you refer to the hornak et al force field, which
> >> would then can be found in amber as 99SB
> >>
> >> Adrian
> >>
> >>
> >>
> >> xiaoqin huang wrote:
> >>> got it, modify 4 torsional potentials.
> >>>
> >>>
> >>>
> >>>> From: xqhuang1018_at_msn.com
> >>>> To: amber_at_ambermd.org
> >>>> Date: Thu, 28 May 2009 14:16:35 -0400
> >>>> Subject: [AMBER] ask for parm99MOD
> >>>>
> >>>>
> >>>> hi, anyone can help me to find where is the parm99MOD set? I need it for GB simulations.
> >>>> thanks a lot
> >>>>
> >>>> xiaoqin
> >>>>
> >>>> 05/28/2009
> >>>>
> >>>>
> >>>> _________________________________________________________________
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> >> --
> >> Dr. Adrian E. Roitberg
> >> Associate Professor
> >> Quantum Theory Project
> >> Department of Chemistry
> >>
> >> Senior Editor. Journal of Physical Chemistry
> >> American Chemical Society
> >>
> >> University of Florida PHONE 352 392-6972
> >> P.O. Box 118435 FAX 352 392-8722
> >> Gainesville, FL 32611-8435 Email adrian_at_qtp.ufl.edu
> >>
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> >
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>
> --
> Dr. Adrian E. Roitberg
> Associate Professor
> Quantum Theory Project
> Department of Chemistry
>
> Senior Editor. Journal of Physical Chemistry
> American Chemical Society
>
> University of Florida PHONE 352 392-6972
> P.O. Box 118435 FAX 352 392-8722
> Gainesville, FL 32611-8435 Email adrian_at_qtp.ufl.edu
>
> _______________________________________________
> AMBER mailing list
> AMBER_at_ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber

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