AMBER Archive (2009)

Subject: [AMBER] mpirun problem in HPC

From: Vijay Manickam Achari (vjrajamany_at_yahoo.com)
Date: Fri Feb 06 2009 - 01:01:29 CST

Dear sir I have problem in installing amber9 in HPC and I get the out put as below::

prob in HPC for mpirun
vijay_at_ptmlxclus:~/Simulation> mpirun -np 16 pmemd -O -i MD-betaMalto-lyoHIGH.in -p maltose_lyoHIGH.top -c betaMalto-lyoHIGH-MD18-run0700.rst_100000 -o betaMalto-lyoHIGH-MD18-run0700.out -x betaMalto-lyoHIGH-MD18-run0700.traj -r betaMalto-lyoHIGH-MD18-run0800.rst
You can't run mpdboot on ['cl1n003'] version of python must be >= 2.4, current ['']
You can't run mpdboot on ['cl1n002'] version of python must be >= 2.4, current ['']
You can't run mpdboot on ['cl1n001'] version of python must be >= 2.4, current ['']
You can't run mpdboot on ['cl1n004'] version of python must be >= 2.4, current ['']
mpiexec: unable to use -nolocal for mpd ring with size 1
vijay_at_ptmlxclus:~/Simulation>

Vijay Manickam Achari
(Phd Student c/o Prof Rauzah Hashim)
Chemistry Department,
University of Malaya,
Malaysia
 vjramana_at_gmail.com

      

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