AMBER Archive (2009)

Subject: [AMBER] amber9 installation problem in SMP IA64

From: Vijay Manickam Achari (vjrajamany_at_yahoo.com)
Date: Fri Feb 06 2009 - 01:00:16 CST

Dear amber users,

Here I have posted a problem which I encounter during installation of amber9

prob in SMP (128cores IA64) for amber9 installation:
../configure -lam -verbose -mmtsb -bintraj gfortran
then edit the config.h and changed gfortran to hf77 or mpif77

the error as below during make parallel:
netcdf.f90:(.text+0x449a2): undefined reference to `nf_get_vara_real_'
.../netcdf/lib/libnetcdf.a(netcdf.o): In function `__netcdf__nf90_get_var_6d_fourbytereal':
netcdf.f90:(.text+0x45252): undefined reference to `nf_get_varm_real_'
netcdf.f90:(.text+0x453e2): undefined reference to `nf_get_vars_real_'
netcdf.f90:(.text+0x454e2): undefined reference to `nf_get_vara_real_'
.../netcdf/lib/libnetcdf.a(netcdf.o): In function `__netcdf__nf90_get_var_7d_fourbytereal':
netcdf.f90:(.text+0x45e42): undefined reference to `nf_get_varm_real_'
netcdf.f90:(.text+0x45ff2): undefined reference to `nf_get_vars_real_'
netcdf.f90:(.text+0x46112): undefined reference to `nf_get_vara_real_'
.../netcdf/lib/libnetcdf.a(netcdf.o): In function `__netcdf__nf90_get_var_1d_eightbytereal':
netcdf.f90:(.text+0x46662): undefined reference to `nf_get_varm_double_'
netcdf.f90:(.text+0x46772): undefined reference to `nf_get_vars_double_'
netcdf.f90:(.text+0x46802): undefined reference to `nf_get_vara_double_'
.../netcdf/lib/libnetcdf.a(netcdf.o): In function `__netcdf__nf90_get_var_2d_eightbytereal':
netcdf.f90:(.text+0x46df2): undefined reference to `nf_get_varm_double_'
netcdf.f90:(.text+0x46f22): undefined reference to `nf_get_vars_double_'
netcdf.f90:(.text+0x46fc2): undefined reference to `nf_get_vara_double_'
.../netcdf/lib/libnetcdf.a(netcdf.o): In function `__netcdf__nf90_get_var_3d_eightbytereal':
netcdf.f90:(.text+0x476d2): undefined reference to `nf_get_varm_double_'
netcdf.f90:(.text+0x47822): undefined reference to `nf_get_vars_double_'
netcdf.f90:(.text+0x478e2): undefined reference to `nf_get_vara_double_'
.../netcdf/lib/libnetcdf.a(netcdf.o): In function `__netcdf__nf90_get_var_4d_eightbytereal':
netcdf.f90:(.text+0x48072): undefined reference to `nf_get_varm_double_'
netcdf.f90:(.text+0x481d2): undefined reference to `nf_get_vars_double_'
netcdf.f90:(.text+0x482a2): undefined reference to `nf_get_vara_double_'
.../netcdf/lib/libnetcdf.a(netcdf.o): In function `__netcdf__nf90_get_var_5d_eightbytereal':
netcdf.f90:(.text+0x48ad2): undefined reference to `nf_get_varm_double_'
netcdf.f90:(.text+0x48c52): undefined reference to `nf_get_vars_double_'
netcdf.f90:(.text+0x48d42): undefined reference to `nf_get_vara_double_'
.../netcdf/lib/libnetcdf.a(netcdf.o): In function `__netcdf__nf90_get_var_6d_eightbytereal':
netcdf.f90:(.text+0x495f2): undefined reference to `nf_get_varm_double_'
netcdf.f90:(.text+0x49782): undefined reference to `nf_get_vars_double_'
netcdf.f90:(.text+0x49882): undefined reference to `nf_get_vara_double_'
.../netcdf/lib/libnetcdf.a(netcdf.o): In function `__netcdf__nf90_get_var_7d_eightbytereal':
netcdf.f90:(.text+0x4a1d2): undefined reference to `nf_get_varm_double_'
netcdf.f90:(.text+0x4a382): undefined reference to `nf_get_vars_double_'
netcdf.f90:(.text+0x4a4a2): undefined reference to `nf_get_vara_double_'
collect2: ld returned 1 exit status
mpif77: No such file or directory
make[1]: *** [sander.MPI] Error 1
make[1]: Leaving directory `/usr/local/amber9/src/sander'
make: *** [parallel] Error 2
ptmlxsmp:/usr/local/amber9/src #

Vijay Manickam Achari
(Phd Student c/o Prof Rauzah Hashim)
Chemistry Department,
University of Malaya,
Malaysia
 vjramana_at_gmail.com

      

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