AMBER Archive (2009)

Subject: RE: [AMBER] compiling errors

From: Ross Walker (ross_at_rosswalker.co.uk)
Date: Wed Feb 04 2009 - 18:48:14 CST

Hi Gard,

It would appear that you are using some network install of amber. This
version was obviously not built statically and used different compiler
versions than are on your machine. Hence you will not be able to run it and
trying to install the correct libraries etc will just be a disaster.

I would suggest installing it locally on your own machine. Alternatively
contact the person who built the network version of the code and ask them to
build it statically. Also have them check that the architecture and
operating system they built it on matches that on your machine.

All the best
Ross

> -----Original Message-----
> From: amber-bounces_at_ambermd.org [mailto:amber-bounces_at_ambermd.org] On
> Behalf Of Gard Nelson
> Sent: Wednesday, February 04, 2009 4:30 PM
> To: amber_at_ambermd.org
> Subject: [AMBER] compiling errors
>
> I'm trying to get through the Amber 10 tutorial, but I'm getting the
> following errors when I try to run sander. When I try to run it on my
> computer I get:
>
> ... <http://hec.utah.edu/common/cbmsfs/u0623698/amber10/exe/sander>
> /amber10/exe/sander<http://hec.utah.edu/common/cbmsfs/u0623698/amber10/exe
> /sander>:
> error while loading shared libraries: libsvml.so: wrong ELF class:
> ELFCLASS64
>
> when I try to run it on the network, I get:
>
> ... <http://hec.utah.edu/common/cbmsfs/u0623698/amber10/exe/sander>
> /amber10/exe/sander<http://hec.utah.edu/common/cbmsfs/u0623698/amber10/exe
> /sander>:
> error while loading shared libraries: libsvml.so: cannot open shared
> object
> file: No such file or directory
> I'm using the command given in the tutorial (section 3, about sander), so
> I
> don't think it should have anything to do with that. At least one of my
> coworkers was also unable to compile Amber 10.
>
> Any ideas?
>
> Thanks,
> Gard
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