AMBER Archive (2008)

Subject: Re: AMBER: install amber 10 on linux with openSUSE 10.2 (x86-64)

From: wl2290_at_columbia.edu
Date: Mon Dec 22 2008 - 17:26:10 CST

Dear Dr. Case,

Thanks for your help.

I tried to use gfortran:

setenv LD_LIBRARY_PATH
/root/gcc-4.3-x86-64-linux/gcc-4.3/lib:/lib:/lib64:/usr/lib:/usr/lib64:/usr/X11R6/lib:/usr/X11R6/lib64

./configure_amber -static gfortran -> successful

The compiling details are shown in the two attachments: one attachment
is make_serial from the following:
make serial > make_serial

The other attachment includes warnings and errors from make serial:
warning_errors

Thanks,
Wen

Quoting "David A. Case" <case_at_biomaps.rutgers.edu>:

> On Fri, Dec 19, 2008, wl2290_at_columbia.edu wrote:
>>
>> I have been trying to install amber 10 on a linux with openSUSE 10.2
>> (x86-64). I downloaded both g95 and gfortran on the computer, and both
>> led successful creation of config_amber.h from
>>
>> either ./configure_amber -nopar g95 or ./configure_amber -static gfortran
>>
>> But both have problems with "make serial" with the errors below:
>>
>> warning and error messages:
>>
>> In file _ew_setup.f:588
>> ...
>> /usr/include/c++/4.1.2/bits/locale_facets.h:686: error: ???__to_type???
>
> I think we need to know more about the "..." above. And about the
> actual errors. Does ew_setup.f fail to compile? Which compiler? It's
> not clear how/why trying to compile ew_setup.f should involve some c++
> header file. And (below) you seem to have library files from gcc-4.3,
> yet the above seems to refer to files from 4.1.2.
>
>> Here is the setting:
>> setenv LD_LIBRARY_PATH
>> /root/gcc-4.3-x86-64-linux/gcc-4.3/lib:/lib:/lib64:/usr/lib:/usr/lib64:/usr/X11R6/lib:/usr/X11R6/lib64:
>> /root/g95-install/lib/gcc-lib/x86_64-suse-linux-gnu/4.0.3
>
> You seem to think this variable is important, but why? It seems
> possible that some mixup between g95 and gfortran/gcc-4.3 and/or
> gcc-4.1.2 is taking place, but I'm just guessing.
>
> Bottom line is that we need to know what the real error is, and exactly
> what path you used to get there.
>
> ...dac
>
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