AMBER Archive (2008)

Subject: Re: AMBER: distance restraint between non-bonded molecules]

From: Ilyas Yildirim (yildirim_at_pas.rochester.edu)
Date: Fri Dec 19 2008 - 17:06:35 CST

Taufik,

I tried a couple tests on your structure, and whether I use a group of
atoms or single atom to define at1 or at2, everything works fine. Did you
try to re-install amber and see if that will solve the problem? If not, I
will send you all the tests I've done. I am using amber9 by the way.

On Fri, 19 Dec 2008, Taufik Al-Sarraj wrote:

> Potentially dangerous attachments were identified and removed from this
> message.
>
> of course,
>
> RSTdel is the original RST file and RST4 is the one i modified manually
> to have the correct atom number.
>
> Best,
> Taufik
> 

-- 
  Ilyas Yildirim, Ph.D.
  ---------------------------------------------------------------
  = Hutchison Hall B#10          - Department of Chemistry      =
  =                              - University of Rochester      =
  = 585-275-6766 (office)        -                              =
  = http://www.pas.rochester.edu/~yildirim/                     =
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