AMBER Archive (2008)

Subject: AMBER: install amber 10 on linux with openSUSE 10.2 (x86-64)

From: wl2290_at_columbia.edu
Date: Fri Dec 19 2008 - 12:16:39 CST

Hell All,

I have been trying to install amber 10 on a linux with openSUSE 10.2
(x86-64). I downloaded both g95 and gfortran on the computer, and both
led successful creation of config_amber.h from

either ./configure_amber -nopar g95 or ./configure_amber -static gfortran

But both have problems with "make serial" with the errors below:

warning and error messages:

lopos amber10/src# make serial > mkserial
  In file _ew_setup.f:541

    if (ibcbeg-1) 11,15,16
                                             1
Warning: Obsolete: arithmetic IF statement at (1)
  In file _ew_setup.f:588
...
/usr/include/c++/4.1.2/bits/locale_facets.h:686: error: ‘__to_type’
does not name a type
/usr/include/c++/4.1.2/bits/locale_facets.h:699: error: ‘size_t’ does
not name a type
/usr/include/c++/4.1.2/bits/locale_facets.h:712: error: expected ‘,’
or ‘...’ before ‘*’ token
...
/usr/include/c++/4.1.2/bits/codecvt.h:217: error: ‘size_t’ has not
been declared
...
/usr/include/c++/4.1.2/istream:92: error: ‘streamsize’ does not name a type
...
/usr/include/c++/4.1.2/bits/ostream.tcc:483: error: ‘streamsize’ has
not been declared
...
/usr/include/c++/4.1.2/fstream:80: error: expected ‘;’ before ‘<’ token
...
/usr/include/c++/4.1.2/bits/basic_string.h: In member function ‘_Alloc
std::basic_string<_CharT, _Traits, _Alloc>::get_allocator() const
[with _CharT = char, _Traits = std::char_traits<char>, _Alloc =
std::allocator<char>]’:
...
/usr/include/c++/4.1.2/bits/stringfwd.h:49: error: declaration of
‘struct std::allocator<char>’
...
/usr/include/c++/4.1.2/bits/locale_facets.h:4562: error: incomplete
type ‘std::ctype_base’ used in nested name specifier
...

Here is the setting:
setenv LD_LIBRARY_PATH
/root/gcc-4.3-x86-64-linux/gcc-4.3/lib:/lib:/lib64:/usr/lib:/usr/lib64:/usr/X11R6/lib:/usr/X11R6/lib64:
/root/g95-install/lib/gcc-lib/x86_64-suse-linux-gnu/4.0.3

I was hoping that you could help on this.

Thanks,
Wen Li

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