AMBER Archive (2008)

Subject: Re: AMBER: problem with toturial A3 (MM-PBSA)

From: Carlos Simmerling (
Date: Sat Dec 13 2008 - 09:35:13 CST

please send exactly what you tried to do and the exact messages that the
program gave you. also check the leap.log file for any warnings or errors
and include that.
it's very hard to help when we can't see what happened.

On Sat, Dec 13, 2008 at 10:22 AM, Maryam Hamzehee

> Dear Amber Users
> I am trying to run toturial A3 (MM-PBSA) but I have problem in building
> the structures related to complex of ras-raf .pdb (i.e. ras-raf.prmtop
> ras-raf.inpcrd) using saveamberparm com ras-raf.prmtop ras-raf.inpcrd
> command. The "saveamberparm" command does not generate mentioned
> structures. Any help in this regard would be higly appreciated.
> Thanks
> Maryam

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