AMBER Archive (2008)

Subject: AMBER: problem with toturial A3 (MM-PBSA)

From: Maryam Hamzehee (maryam_h_7860_at_yahoo.com)
Date: Sat Dec 13 2008 - 09:22:58 CST

Dear Amber Users
I am trying to run toturial A3 (MM-PBSA) but I have problem in building the structures  related to complex of ras-raf .pdb (i.e. ras-raf.prmtop ras-raf.inpcrd) using saveamberparm com ras-raf.prmtop ras-raf.inpcrd command. The "saveamberparm" command does not generate mentioned structures. Any help in this regard would be higly appreciated.
 
Thanks
Maryam
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