AMBER Archive (2008)

Subject: Re: AMBER: Amber 9 installation problems

From: drugdesign (drugdesign_at_yandex.ru)
Date: Thu Nov 13 2008 - 10:25:34 CST

This works! Thank you, Ross.

Best regards,
Andrew

13.11.08, 00:16, "Ross Walker" <ross_at_rosswalker.co.uk>:

> Hi Andrew,
> I think it may be an issue with building statically and your system not
> having static version of the X11 libraries installed. On most systems these
> come as part of the xorg-dev package but obviously on OpenSuse 11 thi is not
> the case.
> Edit your config.h file and remove all occurrences to "-static" then
> cd $AMBERHOME/src
> make clean
> cd leap
> make install
> and see if that helps.
> Good luck,
> Ross
> > -----Original Message-----
> > From: owner-amber_at_scripps.edu [mailto:owner-amber_at_scripps.edu] On Behalf
> > Of drugdesign
> > Sent: Wednesday, November 12, 2008 11:10 AM
> > To: amber_at_scripps.edu
> > Subject: Re: AMBER: Amber 9 installation problems
> >
> > In attachment is config.h and large part of log. Maybe some problems with
> > lib64?
> >
> > Best regards,
> > Andrew
> >
> > 12.11.08, 18:21, "Ross Walker" <ross_at_rosswalker.co.uk>:
> >
> > > > I am trying to install Amber 9 on OpenSuse 11 64 bit system:
> > > >
> > > > /usr/lib64/gcc/x86_64-suse-
> > linux/4.3/../../../../lib64/libX11.a(xcb_io.o):
> > > > In function `_XReply':
> > > ....
> > > > In function `wait_or_poll_for_event':
> > > > (.text+0x3d2): undefined reference to `xcb_poll_for_event'
> > > > collect2: ld returned 1 exit status
> > > > make[2]: *** [xaLeap] Error 1
> > > > make[2]: Leaving directory `/usr/local/amber9/src/leap/src/leap'
> > > > make[1]: *** [install] Error 2
> > > > make[1]: Leaving directory `/usr/local/amber9/src/leap'
> > > > make: *** [serial] Error 2
> > > Your original error message would have occurred much earlier than the
> > output
> > > you provide. I suspect something like cannot find library ... or
> > skipping
> > > incompatible library ...
> > > Can you please try to locate the full error message and post that, along
> > > with your config.h file.
> > > All the best
> > > Ross
> > > /\
> > > \/
> > > |\oss Walker
> > > | Assistant Research Professor |
> > > | San Diego Supercomputer Center |
> > > | Tel: +1 858 822 0854 | EMail:- ross_at_rosswalker.co.uk |
> > > | http://www.rosswalker.co.uk | PGP Key available on request |
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> > not
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