AMBER Archive (2008)

Subject: RE: AMBER: Amber 9 installation problems

From: Ross Walker (ross_at_rosswalker.co.uk)
Date: Wed Nov 12 2008 - 15:16:03 CST

Hi Andrew,

I think it may be an issue with building statically and your system not
having static version of the X11 libraries installed. On most systems these
come as part of the xorg-dev package but obviously on OpenSuse 11 thi is not
the case.

Edit your config.h file and remove all occurrences to "-static" then

cd $AMBERHOME/src
make clean
cd leap
make install

and see if that helps.

Good luck,
Ross

> -----Original Message-----
> From: owner-amber_at_scripps.edu [mailto:owner-amber_at_scripps.edu] On Behalf
> Of drugdesign
> Sent: Wednesday, November 12, 2008 11:10 AM
> To: amber_at_scripps.edu
> Subject: Re: AMBER: Amber 9 installation problems
>
> In attachment is config.h and large part of log. Maybe some problems with
> lib64?
>
> Best regards,
> Andrew
>
> 12.11.08, 18:21, "Ross Walker" <ross_at_rosswalker.co.uk>:
>
> > > I am trying to install Amber 9 on OpenSuse 11 64 bit system:
> > >
> > > /usr/lib64/gcc/x86_64-suse-
> linux/4.3/../../../../lib64/libX11.a(xcb_io.o):
> > > In function `_XReply':
> > ....
> > > In function `wait_or_poll_for_event':
> > > (.text+0x3d2): undefined reference to `xcb_poll_for_event'
> > > collect2: ld returned 1 exit status
> > > make[2]: *** [xaLeap] Error 1
> > > make[2]: Leaving directory `/usr/local/amber9/src/leap/src/leap'
> > > make[1]: *** [install] Error 2
> > > make[1]: Leaving directory `/usr/local/amber9/src/leap'
> > > make: *** [serial] Error 2
> > Your original error message would have occurred much earlier than the
> output
> > you provide. I suspect something like cannot find library ... or
> skipping
> > incompatible library ...
> > Can you please try to locate the full error message and post that, along
> > with your config.h file.
> > All the best
> > Ross
> > /\
> > \/
> > |\oss Walker
> > | Assistant Research Professor |
> > | San Diego Supercomputer Center |
> > | Tel: +1 858 822 0854 | EMail:- ross_at_rosswalker.co.uk |
> > | http://www.rosswalker.co.uk | PGP Key available on request |
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