AMBER Archive (2008)

Subject: Re: AMBER: test sander error in amber7

From: David A. Case (case_at_biomaps.rutgers.edu)
Date: Tue Nov 11 2008 - 06:15:51 CST

On Tue, Nov 11, 2008, Saiful Islam wrote:
>
> cd cytosine; ./Run.cytosine
> Bad : modifier in $ (/).
> make: *** [test.sander] Error 1

This is pretty hard to grok. First, check what is in your TESTsander
environment variable, and/or unset it just to be sure.

Second, google on "Bad : modifier in $ (/)". I don't see any obvious answers
there, but you will probably be more persistent that I was.

Third, go the $AMBEHROME/test/cytosine directory, and try to run the test
case by hand, that is: create the file "in.md", then run

../../exe/sander -O -i in.md -c crd.md.23

Note that amber7 was released 8 years ago, and there have been three major
releases since then. Very few people on the list probably even have this code
anymore. But I don't recall having seen the problem you report.

...good luck...dac

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