AMBER Archive (2008)

Subject: RE: AMBER: problem in installing parallel version of amber10 with lam

From: Shibasish Chowdhury (shiba_udel_at_yahoo.com)
Date: Tue Sep 16 2008 - 05:37:06 CDT

Thanks Ross. I am using gcc and gfortran for the compilation with following version.
gcc (GCC) 4.1.1 20070105 (Red Hat 4.1.1-52) and GNU Fortran 95 (GCC) 4.1.1 20070105 (Red Hat 4.1.1-52)

The operating system is red hat enterprise linux 5 (x86_64).
If you nee

--- On Mon, 9/15/08, Ross Walker <ross_at_rosswalker.co.uk> wrote:
From: Ross Walker <ross_at_rosswalker.co.uk>
Subject: RE: AMBER: problem in installing parallel version of amber10 with lam
To: amber_at_scripps.edu
Date: Monday, September 15, 2008, 10:02 PM

 
 

Hi Shibasish,

  

What compiler and version are you using? The problem you are
seeing is an internal problem with the compiler itself and there is not much we
can do other than try to make a work around. However, such problems are often
solved by downloading an updated version of the compiler. If you let us know
the version, operating system etc we can try and help some more.

  

All the best

Ross

  

From:
owner-amber_at_scripps.edu [mailto:owner-amber_at_scripps.edu] On Behalf Of Shibasish
Chowdhury

Sent: Sunday, September 14, 2008 9:20 PM

To: amber_at_scripps.edu

Subject: AMBER: problem in installing parallel version of amber10 with
lam

  

 
  
  Hi,

       I am facing problem in installing amber10 parallel
  version in my x86_64 dell poweredge server. I followed the step suggested in
  amber10 manual. First I installed MPI library (lam-7.1.3) and installation
  was successful. Then completed upto step ./configure_lam. However, during
  make parallel, the installation shows following error

  -----------------------------------------------------------------------------------------------

  _schlegel_full.f: In function ˇschlegel_full˘:

  _schlegel_full.f:172: internal compiler error: in gfc_conv_array_transpose,
  at fortran/trans-array.c:770

  Please submit a full bug report,

  with preprocessed source if appropriate.

  See <URL:http://bugzilla.redhat.com/bugzilla> for instructions.

  /home/shiba/amber10/bin/mpif77: No such file or directory

  make[1]: *** [schlegel_full.o] Error 1

  make[1]: Leaving directory `/home/shiba/amber10/src/sander'

  make: *** [parallel] Error 2

  ----------------------------------------------------------------------------------------------------

  Could anybody suggest anything which could be useful?

  

  By the way, the serial version was installed successfully and working fine.

  

  Thanks

  Shibasish Chowdhury
  
 

  

 

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