AMBER Archive (2008)

Subject: Re: AMBER: error in parallel amber 9 test

From: David A. Case (
Date: Sat Aug 02 2008 - 20:37:10 CDT

On Sun, Aug 03, 2008, Jaber Jahanbin Sardroodi wrote:

> I had the following probleme in parallel test of amber 9 (my system is
> Fedora 9, on AMD Phenom quad core processor, openmpi and gfortran):
> passed all previous tests ...
> cd bintraj; ./Run.bintraj
> sander and ptraj: test sander netCDF output and ptraj netCDF input
> [localhost.localdomain:19636] MPI_ABORT invoked on rank 0 in communicator
> MPI_COMM_WORLD with errorcode 1

You should look at the output files in the bintraj directory to see if they
offer any clues. (I'm assuming you used the "-bintraj" option when running
the configure script.)


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