AMBER Archive (2008)

Subject: AMBER: big molecule numbers ( simulation with many formamide molecules )

From: Adrien Delmont (adriendelmont_at_yahoo.com)
Date: Sat Jul 26 2008 - 04:04:08 CDT

Dear All,

Thanks a lot for your suggestions. I want to run a simulation with many formamide molecules. Well but How can I define the molecule number for a 'solvent' box containing lots of my own molecules. And Are there any different options for running a simulation with many formamide molecule ? also I want to see the simulation box and my formamide molecules in it. So How can I do that?

Many thanks in advance

Adrien

      

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