AMBER Archive (2008)

Subject: AMBER: Tutorial 6

From: Beale, John (jbeale_at_stlcop.edu)
Date: Mon Jul 14 2008 - 11:48:21 CDT

I am working through tutorial 6, the one that utilizes tazobactam and
beta-lactamase. I am at the point where I want to do targeted MD of the
tazobactam:beta-lactamase complex. There are two files that are
referenced and that can be downloaded. They are:

 

vm1_complex_target.prmtop

 

and

 

vm1_complex_target.inpcrd

 

 

There is no information in the tutorial about how these two target files
were generated. Can someone tell me what these files represent and where
they came from?

 

Thanks!

 

John

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