AMBER Archive (2008)

Subject: AMBER: querry

From: dipti lele (
Date: Mon Jul 14 2008 - 03:05:15 CDT

Hello Sir,
> I intend to use AMBER for simulating a glycosylated peptide. The
> structure of it is not known so I need to make a straight chain peptide.
> has a diasaccharide attached to it. N acetyl galatosamine and galactose.
> can I make this molecule using tleap. does glycam force filed even involve
> these moieties?
> Can you please guide me regarding this and what I can do further for
> getting it?
> With Regards,

Deepti Lele,
NII, New Delhi.

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