AMBER Archive (2008)

Subject: Re: AMBER: nmode analysis

From: Mark Williamson (mark.williamson_at_imperial.ac.uk)
Date: Mon Jun 30 2008 - 07:12:09 CDT

Joachim Reichelt wrote:

> So what program can be used to visualize the modes. VMD does not uses
> them but the tarjectories.

You might want to try Interactive Essential Dynamics, since IIRC this
can do what you want:

http://mccammon.ucsd.edu/ied/

http://dx.doi.org/10.1007/s10822-004-4121-z

regards,

Mark
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