AMBER Archive (2008)

Subject: AMBER: nmode analysis

From: Joachim Reichelt (Joachim.Reichelt_at_helmholtz-hzi.de)
Date: Mon Jun 30 2008 - 06:53:21 CDT

dear all,

I want to visualise the vibrations results from amber8 nmode.
The manual states:
ivform 0 if the normal mode eigenvectors are to be written out in
unformatted form; 1 to
use the Amber standard formatted option (default); 2 to write out the normal
modes in MKL format for the molekel program (see
http://www.cscs.ch/molekel).

but molekel 5 cannot read mkl files any longer.
So what program can be used to visualize the modes. VMD does not uses
them but the tarjectories. 

-- 
Joachim
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