AMBER Archive (2008)

Subject: RE: AMBER: Compile amber10 parallel with suppied LAM

From: James W. Caldwell (jim-bob_at_pacbell.net)
Date: Fri Jun 13 2008 - 12:17:57 CDT

OK, part of the mystery is solved. I needed to have
 amber10/bin explicitly in my path to get lamboot to
 see hboot.

Now on to multiple hosts...

best,
jim

-----Original Message-----
From: owner-amber_at_scripps.edu [mailto:owner-amber_at_scripps.edu]On Behalf
Of James W. Caldwell
Sent: Friday, June 13, 2008 10:06 AM
To: amber_at_scripps.edu
Subject: RE: AMBER: Compile amber10 parallel with suppied LAM

Here's what happens with the lamboot that's produced in the
amber10 compile (note the host is binar.umassmed.edu, I've tried
localhost, binar and binar.umassmed.edu in the amber10/etc/lam-bhost.def
file):

n-1<20976> ssi:boot:base: looking for boot schema in following directories:
n-1<20976> ssi:boot:base: <current directory>
n-1<20976> ssi:boot:base: $TROLLIUSHOME/etc
n-1<20976> ssi:boot:base: $LAMHOME/etc
n-1<20976> ssi:boot:base: /home/caldwelj/amber10/etc
n-1<20976> ssi:boot:base: looking for boot schema file:
n-1<20976> ssi:boot:base: lam-bhost.def
n-1<20976> ssi:boot:base: found boot schema:
/home/caldwelj/amber10/etc/lam-bhos
t.def
n-1<20976> ssi:boot:rsh: found the following hosts:
n-1<20976> ssi:boot:rsh: n0 binar (cpu=1)
n-1<20976> ssi:boot:rsh: resolved hosts:
n-1<20976> ssi:boot:rsh: n0 binar --> 10.2.0.1 (origin)
n-1<20976> ssi:boot:rsh: starting RTE procs
n-1<20976> ssi:boot:base:linear: starting
n-1<20976> ssi:boot:base:server: opening server TCP socket
n-1<20976> ssi:boot:base:server: opened port 33749
n-1<20976> ssi:boot:base:linear: booting n0 (binar)
n-1<20976> ssi:boot:rsh: starting lamd on (binar)
n-1<20976> ssi:boot:rsh: starting on n0 (binar): hboot -t -c
lam-conf.lamd -d -I
 -H 10.2.0.1 -P 33749 -n 0 -o 0
n-1<20976> ssi:boot:rsh: launching locally
n-1<20976> ssi:boot:base:linear: Failed to boot n0 (binar)
n-1<20976> ssi:boot:base:server: closing server socket
n-1<20976> ssi:boot:base:linear: aborted!
lamboot did NOT complete successfully
[caldwelj_at_binar test]$

-----Original Message-----
From: owner-amber_at_scripps.edu [mailto:owner-amber_at_scripps.edu]On Behalf
Of Gustavo Seabra
Sent: Thursday, June 12, 2008 11:20 AM
To: amber_at_scripps.edu
Subject: Re: AMBER: Compile amber10 parallel with suppied LAM

On Thu, Jun 12, 2008 at 2:08 PM, James W. Caldwell <jim-bob_at_pacbell.net>
wrote:
> I execute "lamboot" but nothing happens.
> System: SUSE 10/dual core cpu/intel fortran/

OK, may you should give us the full sequence of commands you are
using. Are you using a script to run sander? Also, what does the
command 'which lamboot' returns?
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