AMBER Archive (2008)

Subject: RE: AMBER: Compile amber10 parallel with suppied LAM

From: James W. Caldwell (jim-bob_at_pacbell.net)
Date: Fri Jun 13 2008 - 12:06:19 CDT

Here's what happens with the lamboot that's produced in the
amber10 compile (note the host is binar.umassmed.edu, I've tried
localhost, binar and binar.umassmed.edu in the amber10/etc/lam-bhost.def
file):

n-1<20976> ssi:boot:base: looking for boot schema in following directories:
n-1<20976> ssi:boot:base: <current directory>
n-1<20976> ssi:boot:base: $TROLLIUSHOME/etc
n-1<20976> ssi:boot:base: $LAMHOME/etc
n-1<20976> ssi:boot:base: /home/caldwelj/amber10/etc
n-1<20976> ssi:boot:base: looking for boot schema file:
n-1<20976> ssi:boot:base: lam-bhost.def
n-1<20976> ssi:boot:base: found boot schema:
/home/caldwelj/amber10/etc/lam-bhos
t.def
n-1<20976> ssi:boot:rsh: found the following hosts:
n-1<20976> ssi:boot:rsh: n0 binar (cpu=1)
n-1<20976> ssi:boot:rsh: resolved hosts:
n-1<20976> ssi:boot:rsh: n0 binar --> 10.2.0.1 (origin)
n-1<20976> ssi:boot:rsh: starting RTE procs
n-1<20976> ssi:boot:base:linear: starting
n-1<20976> ssi:boot:base:server: opening server TCP socket
n-1<20976> ssi:boot:base:server: opened port 33749
n-1<20976> ssi:boot:base:linear: booting n0 (binar)
n-1<20976> ssi:boot:rsh: starting lamd on (binar)
n-1<20976> ssi:boot:rsh: starting on n0 (binar): hboot -t -c
lam-conf.lamd -d -I
 -H 10.2.0.1 -P 33749 -n 0 -o 0
n-1<20976> ssi:boot:rsh: launching locally
n-1<20976> ssi:boot:base:linear: Failed to boot n0 (binar)
n-1<20976> ssi:boot:base:server: closing server socket
n-1<20976> ssi:boot:base:linear: aborted!
lamboot did NOT complete successfully
[caldwelj_at_binar test]$

-----Original Message-----
From: owner-amber_at_scripps.edu [mailto:owner-amber_at_scripps.edu]On Behalf
Of Gustavo Seabra
Sent: Thursday, June 12, 2008 11:20 AM
To: amber_at_scripps.edu
Subject: Re: AMBER: Compile amber10 parallel with suppied LAM

On Thu, Jun 12, 2008 at 2:08 PM, James W. Caldwell <jim-bob_at_pacbell.net>
wrote:
> I execute "lamboot" but nothing happens.
> System: SUSE 10/dual core cpu/intel fortran/

OK, may you should give us the full sequence of commands you are
using. Are you using a script to run sander? Also, what does the
command 'which lamboot' returns?
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