AMBER Archive (2008)

Subject: Re: AMBER: problems with sleap

From: David A. Case (
Date: Wed Jun 04 2008 - 18:52:00 CDT

On Wed, Jun 04, 2008, Alan wrote:
> sleap -f >| sleap.out
> For one I got top and xyz, but all others, I got this:
> [snip]
> [gtkleap]$ X = loadpdb mypdb.pdb
> basic_string::substr
> and it failed.
> What's wrong with my pdbs?

Without seing your files, it's hard to be of much help. There may be nothing
wrong with the pdb files -- the fastbld part of sleap is very new, and might
not work for all molecules. Can you post an example that gives the
above error?

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