AMBER Archive (2008)

Subject: AMBER: writing a script in amber

From: Taufik Al-Sarraj (taufik.alsarraj_at_utoronto.ca)
Date: Mon Jun 02 2008 - 19:28:39 CDT

Hi,

I have a structure that should be covered by a functional group. If i
have the pdb/mol2 structure of the surface and the pdb/mol structure of
the functional group. Also the functional group is to be attached at
specific locations in the surface -not sure how i will define multiple
connections points on the surface. Has there been any work of this
nature before? my programing skills are limited, so any guidance in this
are would be helpful.

I am using AMBER 9 on IRIX64 ver 6.5

Best,
Taufik


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