AMBER Archive (2008)

Subject: Re: AMBER: AMBER install problem

From: David A. Case (
Date: Mon Mar 10 2008 - 19:50:30 CDT

On Sat, Mar 08, 2008, Kijeong Kwac wrote:

> I have some error message in trying to intall AMBER on intel 64bit cpu machine.
> I would be grateful if anyone could give me some help.
> I have configured the system using "./configure -mpich -bintraj ifort_x86_64".
> I got the error in the "$AMBERHOME/src/netcdf/src/ncgen".
> The following is the first error part of output:
> gcc -o ncgen -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -m64 -O2 main.o load.o ncgentab.o escapes.o getfill.o init.o genlib.o ../libsrc/libnetcdf.a
> main.o: In function `main':
> main.c:(.text+0x10e): undefined reference to `yyin'
> main.c:(.text+0x113): undefined reference to `yyparse'

Unusual error. We would have to see more of what happened during the netcdf
configure step. But first, leave off the "-bintraj" flag to see if there are
any other problems lurking around.


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