AMBER Archive (2008)

Subject: Re: AMBER: antechamber run on charged system

From: snoze pa (snoze.pa_at_gmail.com)
Date: Wed Jan 23 2008 - 13:34:04 CST

Use Chimera, I test your PDB in chimera and it is working fine. Chimera uses
antechamber.

On Jan 23, 2008 12:37 PM, David A. Case <case_at_scripps.edu> wrote:

> On Wed, Jan 23, 2008, san_amber roy wrote:
>
> > I tried to run antechamber on the
> system
> > of total charge -1, using the command
> > $AMBERHOME/exe/antechamber -i p_d.pdb -fi pdb -o p_d.prepin -fo prepi -c
> bcc
> > -s 2 ,
>
> Look at the "-nc" flag to antechamber.....dac
>
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