AMBER Archive (2007)

Subject: AMBER: [Fwd: Re: BOUNCE amber@scripps.edu: Non-member submission from [Taufik Al-Sarraj <taufik.alsarraj@utoronto.ca>]]

From: Taufik Al-Sarraj (taufik.alsarraj_at_utoronto.ca)
Date: Wed Nov 28 2007 - 12:23:27 CST

>
> Hi,
> I have recently started using AMBER7, i worked through some of Ross
> Walker tutorials. But what i am really interested in is modelling DNA on
> a Silica surface. i have a couple of questions.
>
> 1. how can i draw a lattice structure for Si. say Si(100)
> 2. is there a force field that can handle both organic (DNA) and
> inorganic (Si) molecules? i can have the Si atoms fixed if needed?
>
> Any hints are much appreciated, Thank you.
>
> Taufik
> Chemical Sensors Group
> UTM
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