AMBER Archive (2007)

Subject: AMBER:

From: Beale, John (jbeale_at_stlcop.edu)
Date: Mon Aug 20 2007 - 10:41:06 CDT

I am trying to set up a parallel implementation of Amber on my Linux
system. When I installed openmpi-1.0.2 i noted no error messages. The
"configure" script ran without problem. When I did the "make parallel"
step the process proceeded without error messages. The "MPI" versions of
sander are installed in the "exe" directory.
 
I have a problem when I try to run sander.MPI. This is what I see:
 
libibverbs: Fatal: Couldn't open sysfs class 'infiniband_verbs'
------------------------------------------------------------------------
----------------
[0,0,0]: OpenIB on host localhost.localdomain was unable to find
any HCS's. Anothet transport will be used instead, although this
may result in lower performance.
------------------------------------------------------------------------
----------------
Unit 6 Error on OPEN: mdin
 
[localhost.localdomain:23965] [0,0,0] ORTE_ERROR_LOG: Not found in
file base/pls_base_proxy.c at line 189
 
 
Can someone help me troubleshoot this problem?
 
Thanks!
 
John Beale
 

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