AMBER Archive (2007)

Subject: Re: AMBER: netcdf support needed (Amber 9, sander imin = 5, -y flag)

From: Geoff Wood (geoffrey.wood_at_epfl.ch)
Date: Mon Jul 23 2007 - 12:23:46 CDT


Dear Prof Simmerling,

I just wondered what the latest is on this?

Cheers, GPF Wood

Hi Carlos:

While you are working on this....

I was just doing some work with imin=5, and I had planned to read in my
new, high precision, netcdf format trajectories.

Unfortunately, trajene.f appears to only support ascii trajectories.

Can you consider addressing this too? (It ought to be a quick
enhancement).

Thanks

Chris

Carlos Simmerling wrote:
> we will get a bug fix posted in the next couple days.
>
> On 3/7/07, S.Sundar Raman <sundar02_at_gmail.com> wrote:
>> Dear amber friends i would like to calculate MM_PBSA form
trajectory,
>> i used imin=5 and used -y for input trajectory file name. i received
>> error
>> from sander which is already reported in the AMBER Mail Reflector
>> Archive.
>> is this can be calculated using amber 9. can i get bug fix for that?
>> thanks for your reply
>> --
>> S.Sundar Raman
>> Chemical Lab,
>> CLRI
>> Chennai-20
>> ph: 044-24411830
>
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Geoffrey Wood
Ecole Polytechnique Fédérale de Lausanne
SB - ISIC - LCBC
BCH 4108
CH - 1015 Lausanne

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