AMBER Archive (2007)

Subject: AMBER: netcdf support needed (Amber 9, sander imin = 5, -y flag)

From: Chris Moth (chris.moth_at_vanderbilt.edu)
Date: Fri Apr 06 2007 - 13:50:29 CDT


Hi Carlos:

While you are working on this....

I was just doing some work with imin=5, and I had planned to read in my
new, high precision, netcdf format trajectories.

Unfortunately, trajene.f appears to only support ascii trajectories.

Can you consider addressing this too? (It ought to be a quick enhancement).

Thanks

Chris

Carlos Simmerling wrote:
> we will get a bug fix posted in the next couple days.
>
> On 3/7/07, S.Sundar Raman <sundar02_at_gmail.com> wrote:
>> Dear amber friends i would like to calculate MM_PBSA form trajectory,
>> i used imin=5 and used -y for input trajectory file name. i received
>> error
>> from sander which is already reported in the AMBER Mail Reflector
>> Archive.
>> is this can be calculated using amber 9. can i get bug fix for that?
>> thanks for your reply
>> --
>> S.Sundar Raman
>> Chemical Lab,
>> CLRI
>> Chennai-20
>> ph: 044-24411830
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