AMBER Archive (2007)

Subject: Re: AMBER: xleap and amber7

From: Saiful Islam (saiful005_at_gmail.com)
Date: Tue Jul 10 2007 - 07:47:00 CDT

Thanks Benjamin,
But it does not work.
Could you please define what was wrong that i have done?

-saiful
Dept. of applied chemistry and chemical technology.
University of Rajshahi.
Bangladesh

On 7/9/07, Benjamin Juhl <itbbju_at_itb.uni-stuttgart.de> wrote:
>
> Hi,
>
> if you add the "exe" directory in $AMBERHOME to your path, you should be
> able to run tleap and xleap from anywhere by just typing "xleap" or
> "tleap", if xleap has been compiled (to check this, ask the one who
> compiled amber7 on your machine).
> e.g. : export PATH=$PATH:/usr/local/amber7/exe
>
> Benjamin
>
>
> Saiful Islam schrieb:
> > Hi,
> > I can run tleap by this command "./tleap" , when my current directory
> > is tleap.
> > But this command doesn't work about xleap, when my current
> > directory is xleap.
> > So what is my fault ?
> > Thanks for any help.
> >
> > On 7/5/07, *Carlos Simmerling* <carlos.simmerling_at_gmail.com
> > <mailto:carlos.simmerling_at_gmail.com>> wrote:
> >
> > is xleap in your current directory when you type ./xleap?
> > that is what the "./" means. If that doesn't make sense, you
> > might need to work with Unix a little first before using Amber.
> >
> >
> > On 7/4/07, *Saiful Islam* <saiful005_at_gmail.com
> > <mailto:saiful005_at_gmail.com>> wrote:
> >
> > Hi,
> > I have set AMBERHOME by the following way-
> > saiful_at_linux-jmbm:~> AMBERHOME=/usr/local/amber7;export
> AMBERHOME
> > saiful_at_linux-jmbm:~> echo $AMBERHOME
> > /usr/local/amber7
> > saiful_at_linux-jmbm:~>
> > I tried to run xleap by the command "./xleap"
> > It says "command not found"
> > what is your command about this ?
> >
> > On 7/2/07, *Adrian Roitberg* < roitberg_at_qtp.ufl.edu
> > <mailto:roitberg_at_qtp.ufl.edu>> wrote:
> >
> > Is your $AMBERHOME variable set ?
> >
> > echo $AMBERHOME should answer that.
> >
> > Are you positive amber7 is installed, you have X enabled
> > and your
> > display is properly set ?
> >
> > 'It is not work' is not enough information for us to help
> > you, sorry.
> >
> > Saiful Islam wrote:
> > > Hi,
> > > $AMBERHOME/exe/xleap
> > > It is not work.
> > > What can i do then ?
> > >
> > > On 7/1/07, Ross Walker < ross_at_rosswalker.co.uk
> > <mailto:ross_at_rosswalker.co.uk>> wrote:
> > >>
> > >> $AMBERHOME/exe/xleap
> > >>
> > >>
> > >> ------------------------------
> > >> *From:* owner-amber_at_scripps.edu
> > <mailto:owner-amber_at_scripps.edu>
> > [mailto:owner-amber_at_scripps.edu
> > <mailto:owner-amber_at_scripps.edu>] *On
> > >> Behalf Of *Saiful Islam
> > >> *Sent:* Saturday, June 30, 2007 21:23
> > >> *To:* amber_at_scripps.edu <mailto:amber_at_scripps.edu>
> > >> *Subject:* AMBER: xleap and amber7
> > >>
> > >> Hi all,
> > >> please send me the command for starting xleap in linux
> > suse10.2 for
> > >> amber7
> > >> I am waiting for such command.
> > >> please help me.
> > >>
> > >>
> > >
> >
> >
>
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