AMBER Archive (2007)

Subject: Re: AMBER: problem in installing amber9

From: Syed Tarique Moin (tarisyed_at_yahoo.com)
Date: Tue Jun 12 2007 - 03:04:57 CDT

Hi

Thanks for you kind suggestion,

But i want to update with amber9, so plz guide me for
the installation,

I have compiler g98 and the Hardware is Intel Xeon
dual processor.

Regard
--- "David A. Case" <case_at_scripps.edu> wrote:

> On Fri, Jun 01, 2007, Syed Tarique Moin wrote:
>
> > I installed amber9 but not looking fine, i have a
> > problem in xleap, that when i make initial files,
> like
> > using the command
> >
> > solvatebox or addions the solvent surrounding the
> > solute not well file (file attached name as
> > amber9.jpg)
> >
> > but its looking right with amber7.jpg (for the
> > comparison) surrounding the solute very well by
> the
> > solvent.
> >
>
> Please see if this helps:
>
>
> http://amber.ch.ic.ac.uk/archive/200406/0298.html
>
> or this:
>
> http://amber.ch.ic.ac.uk/archive/200503/0122.html
>
> or this:
>
> http://amber.ch.ic.ac.uk/archive/200610/0205.html
>
> Since Amber 7 works, you can still use that, I would
> imagine. You might
> provide details about your compiler and what
> architecture (emt64?) you are
> using.
>
> ....dac
>
>
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Syed Tarique Moin,
Junior Research Fellow,
H.E.J. Research Institute of Chemistry,
International Center for Chemical and Biological Sciences,
University of Karachi, Karachi-75720, Pakistan

tarisyed_at_yahoo.com
tarisyed_at_hotmail.com

       
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