AMBER Archive (2007)

Subject: AMBER: Once again, "distance" command in ptraj

From: Roberto Veiga (roberto.sapiens_at_gmail.com)
Date: Mon Jun 04 2007 - 09:06:19 CDT

When running the "distance" command in ptraj, I saw:

-------------------------------------------------------------------------------------------------------
Processing AMBER trajectory file ../prod.mdcrd
DISTANCE: box angles are zero, disabling imaging!
-------------------------------------------------------------------------------------------------------

and I got a distance much larger than I expected between two residues
(because imaging was not used). But in my inpcrd files I provided box
information (box angles are all 90.0 degrees). In ptraj, I used the command
box to reset the box properties, but I got the same. Anything missing?

[]s,

Roberto

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