AMBER Archive (2007)

Subject: Re: AMBER: Modified Nucleic Acid Problem

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Quoting SHARAD gupta <sharadguptaacbr_at_yahoo.co.in>:

> I am preparing modified Nucleic Acid to Simulate it
> under AMBER environment. For this I have prepared respective
> modified monomers on Amber and assigned RESP charges using Gaussian
> programme. I saved the respective library files for these monomers
> with assigned terminals( Head and Tail).
> But when I am Trying to call my complete modified nucleic acid
> molecule, the Xleap is unable to identified it...
> I am unable to trace out the problem.
> Can anyone suggest me, It would be a great help.

ups sorry this is F-60
http://q4md-forcefieldtools.org/REDDB/up/F-60/script1.ff

F.

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• Next message: Carlos Simmerling: "Re: AMBER: How to reimage the trajectories of LES calculations?"
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• In reply to: SHARAD gupta: "AMBER: Modified Nucleic Acid Problem"
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