AMBER Archive (2007)

Subject: AMBER: Modified Nucleic Acid Problem

From: SHARAD gupta (sharadguptaacbr_at_yahoo.co.in)
Date: Wed Mar 21 2007 - 07:22:10 CST

Dear List
                I am preparing modified Nucleic Acid to Simulate it under AMBER environment. For this I have prepared respective modified monomers on Amber and assigned RESP charges using Gaussian programme. I saved the respective library files for these monomers with assigned terminals( Head and Tail).
  But when I am Trying to call my complete modified nucleic acid molecule, the Xleap is unable to identified it...
  I am unable to trace out the problem.
  Can anyone suggest me, It would be a great help.
   
  Thanks

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Sharad Kumar Gupta
Senior Research Fellow
Dr. B. R. Ambedkar Center for Biomedical Research
University of Delhi
Delhi-10007
INDIA
   
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