AMBER Archive (2007)

Subject: Re: AMBER: crd to pdb conversion

From: Ilyas Yildirim (yildirim_at_pas.rochester.edu)
Date: Mon Feb 19 2007 - 07:35:16 CST

Dear Aytug,

.crd files store only the coordinate information. Without knowing what the
atoms are (which are stored in .prmtop file), there is not way you can
create a .pdb file.

On Mon, 19 Feb 2007, AYTUG TUNCEL wrote:

> Dear all,
>
> Is there anyway converting the crd file to pdb format directly without the prmtop file. Because I used the ALASCAN in mm_pbsa module in order to create mutated residues but it requires new prmtop files for binding energy calculation. How can I create the new prmtop files for the corresponding structures that bear the mutated residues?Thanks in advance.
>
> Aytug
>
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-- 
  Ilyas Yildirim
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