AMBER Archive (2007)

Subject: Re: AMBER: hi

From: Anju Sharma (anju.020384_at_gmail.com)
Date: Tue Feb 13 2007 - 22:48:36 CST

hello Sir,

Amber is correctly installed on my machine to my best knowledge.

when i gave the command >ls $AMBERHOME/exe

outcome is :
ls: AMBERHOME?EXE/:no such file or directory
/usr/local/amber8:
QREADMEconfig.h doc exe KNOWN_PROBLEMS test benchmarks dat examples
INSTALL src

On 2/13/07, Ross Walker <ross_at_rosswalker.co.uk> wrote:
>
> Dear Anju,
>
> Has AMBER been correctly installed on your machine? What are the contents
> ofr $AMBERHOME/exe/ ?
>
> All the best
> Ross
>
> /\
> \/
> |\oss Walker
>
> | HPC Consultant and Staff Scientist |
> | San Diego Supercomputer Center |
> | Tel: +1 858 822 0854 | EMail:- ross_at_rosswalker.co.uk |
> | http://www.rosswalker.co.uk | PGP Key available on request |
>
> Note: Electronic Mail is not secure, has no guarantee of delivery, may not
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>
>
> ------------------------------
> *From:* owner-amber_at_scripps.edu [mailto:owner-amber_at_scripps.edu] *On
> Behalf Of *Anju Sharma
> *Sent:* Tuesday, February 13, 2007 02:08
> *To:* amber_at_scripps.edu
> *Subject:* AMBER: hi
>
>
>
> hello
> Aftr installation of Amber8 i tried running the first tutorial bt got
> stuck in the first command only.
> I created nuc.in file which contain my DNA sequence.
> Next step is to create DNA structure using synatx:
>
> $AMBERHOME/exe/nucgen -O -i nuc.in -o nuc.out -d
> $AMBERHOME/dat/leap/parm/nucgen.dat -p nuc.pdb
>
> error m getting is /exe/nucgen is not valid file or directory... tried all
> the options to the best of my knowledge...but in vain.
> Please help me out how to continue...
>
> --
> Anju Sharma
>
> 

-- 
Anju Sharma

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