AMBER Archive (2007)

Subject: RE: AMBER: hi

From: Ross Walker (ross_at_rosswalker.co.uk)
Date: Tue Feb 13 2007 - 10:16:56 CST

Dear Anju,
 
Has AMBER been correctly installed on your machine? What are the contents
ofr $AMBERHOME/exe/ ?
 
All the best
Ross
 
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From: owner-amber_at_scripps.edu [mailto:owner-amber_at_scripps.edu] On Behalf Of
Anju Sharma
Sent: Tuesday, February 13, 2007 02:08
To: amber_at_scripps.edu
Subject: AMBER: hi

hello
Aftr installation of Amber8 i tried running the first tutorial bt got stuck
in the first command only.
I created nuc.in file which contain my DNA sequence.
Next step is to create DNA structure using synatx:
 
$AMBERHOME/exe/nucgen -O -i nuc.in -o nuc.out -d
$AMBERHOME/dat/leap/parm/nucgen.dat -p nuc.pdb
 
error m getting is /exe/nucgen is not valid file or directory... tried all
the options to the best of my knowledge...but in vain.
Please help me out how to continue... 

-- 
Anju Sharma 

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