AMBER Archive (2007)

Subject: Re: AMBER: side chain orientation

From: Fenghui Fan (fenghui_fan_at_yahoo.com)
Date: Tue Feb 06 2007 - 18:11:47 CST

As for a protein, it should has it PDB file. Then the
coodinates of the two side chains has been decided,
then you can know the orientation. I do not know
whether this is what you want. If not, please tell me
a little in detail on what you really want to get.

Best regards.

Fenghuin Fan

--- Esther Brugger <esther_brugger_at_yahoo.com> wrote:

> Dear Amber Users,
>
> Does anyone know which program can be used to
> calculate the orientations of two amino acids which
> are in the different side of backbone of the
> molecule?
> Any advice are appreciated!
> Bests,
>
>
>
> Esther B.
>
>
> ---------------------------------
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