AMBER Archive (2007)

Subject: Re: AMBER: calculating distance between two atoms

From: bertrand russell (betrussell23_at_gmail.com)
Date: Mon Feb 05 2007 - 06:22:16 CST

Dear Carlos,

I tried calculating the distance between two atoms as you said but I am
getting the following error. The input command what I have given is

> distance :193_at_O1P :163_at_OD1 out distance.dat noimage

I am getting the following,
WARNING in ptraj(), distance: Error in specification of the second mask
Ignoring command

I couldn't undestand what is going on.Could you tell me what is wrong with
my command?

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