AMBER Archive (2006)

Subject: AMBER: Compiling Leap problem

From: sethl_at_gatech.edu
Date: Fri Jul 14 2006 - 16:36:38 CDT 

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Dear Amber Community,

I am at a total loss as to why leap will not compile properly under Amber 8 on
my AMD 64, SUSE 10.1, iFort 9.0xx machine.  I did a "./configure -static ifort"
then a "make serial".  Naturally leap doesn't compile, but then I swapped the
config.h file out with one to force 32-bit compilation (it has a "CC=gcc -m32"
flag).  I then "cd $AMBERHOME/src/leap" and do a "make install" but I get the
same result as before.  Here is the output to the screen:

seth_at_ibb02145:/usr/local/amber8/src/leap> make install
Compiling basic programs
cd src/Wc; make
make[1]: Entering directory `/usr/local/amber8/src/leap/src/Wc'
Makefile:10: warning: overriding commands for target `.c.o'
../../../config.h:87: warning: ignoring old commands for target `.c.o'
gcc -m32 -c -I/usr/X11R6/include -O2  -o MapAg.o MapAg.c
In file included from /usr/include/features.h:346,
                 from /usr/include/stdio.h:28,
                 from MapAg.c:18:
/usr/include/gnu/stubs.h:7:27: error: gnu/stubs-32.h: No such file or directory
MapAg.c: In function ‘Malloc’:
MapAg.c:131: warning: incompatible implicit declaration of built-in function
‘malloc’
MapAg.c:135: warning: incompatible implicit declaration of built-in function
‘abort’
MapAg.c:136: warning: incompatible implicit declaration of built-in function
‘exit’
MapAg.c: In function ‘Calloc’:
MapAg.c:144: warning: incompatible implicit declaration of built-in function
‘calloc’
MapAg.c:150: warning: incompatible implicit declaration of built-in function
‘abort’
MapAg.c:151: warning: incompatible implicit declaration of built-in function
‘exit’
MapAg.c: In function ‘MapAg_AssertLooksOk’:
MapAg.c:396: warning: incompatible implicit declaration of built-in function
‘abort’
MapAg.c:397: warning: incompatible implicit declaration of built-in function
‘exit’
make[1]: *** [MapAg.o] Error 1
make[1]: Leaving directory `/usr/local/amber8/src/leap/src/Wc'
make: *** [install] Error 2

Does anyone know what this is?

Thanks,
Seth Lilavivat
Georgia Institute of Technology
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