AMBER Archive (2006)

Subject: AMBER: Compiling Leap problem

From: sethl_at_gatech.edu
Date: Fri Jul 14 2006 - 16:36:38 CDT


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Dear Amber Community,

I am at a total loss as to why leap will not compile properly under Amber 8 on my AMD 64, SUSE 10.1, iFort 9.0xx machine. I did a "./configure -static ifort" then a "make serial". Naturally leap doesn't compile, but then I swapped the config.h file out with one to force 32-bit compilation (it has a "CC=gcc -m32" flag). I then "cd $AMBERHOME/src/leap" and do a "make install" but I get the same result as before. Here is the output to the screen:

seth_at_ibb02145:/usr/local/amber8/src/leap> make install Compiling basic programs cd src/Wc; make make[1]: Entering directory `/usr/local/amber8/src/leap/src/Wc' Makefile:10: warning: overriding commands for target `.c.o' ../../../config.h:87: warning: ignoring old commands for target `.c.o' gcc -m32 -c -I/usr/X11R6/include -O2 -o MapAg.o MapAg.c In file included from /usr/include/features.h:346, from /usr/include/stdio.h:28, from MapAg.c:18: /usr/include/gnu/stubs.h:7:27: error: gnu/stubs-32.h: No such file or directory MapAg.c: In function ‘Malloc’: MapAg.c:131: warning: incompatible implicit declaration of built-in function ‘malloc’ MapAg.c:135: warning: incompatible implicit declaration of built-in function ‘abort’ MapAg.c:136: warning: incompatible implicit declaration of built-in function ‘exit’ MapAg.c: In function ‘Calloc’: MapAg.c:144: warning: incompatible implicit declaration of built-in function ‘calloc’ MapAg.c:150: warning: incompatible implicit declaration of built-in function ‘abort’ MapAg.c:151: warning: incompatible implicit declaration of built-in function ‘exit’ MapAg.c: In function ‘MapAg_AssertLooksOk’: MapAg.c:396: warning: incompatible implicit declaration of built-in function ‘abort’ MapAg.c:397: warning: incompatible implicit declaration of built-in function ‘exit’ make[1]: *** [MapAg.o] Error 1 make[1]: Leaving directory `/usr/local/amber8/src/leap/src/Wc' make: *** [install] Error 2

Does anyone know what this is?

Thanks, Seth Lilavivat Georgia Institute of Technology ----------------------------------------------------------------------- The AMBER Mail Reflector To post, send mail to amber_at_scripps.edu To unsubscribe, send "unsubscribe amber" to majordomo_at_scripps.edu